Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00556 ATGTCTTCTTCGTGTCTGAGTGGAGCCGGGGGAAGAACCTATGGATTCGATTTCGAATTCGTTAAATCTCCGTCTTCATCTACTTTCACATCACACACATCTTCTTCACCTTCCTCAACGATCTCCGAATCGAGCAATTCGCCGCTGGCAATCTCAACGAAGAAGCCCAGAACGCCGCGGAAGCGACCCAACCAAACATACAACGAAGCCGCGGCGCTTCTCTCCACGGCGTACCCGAATTTGTTCTCCACGAAGAACTTGAAAACTCAGGGCAAAGGCAAAGGCAAATTCTCGAGGCCCACATCGGAGAATTTCGATTACGATTCTTCGGAGCTGTTATTGCCGTTCAGAGTCTTCGACGGAACGGCGTCGTGTTTTCTTTTGGACCAAACGGGCCCGAAGCCCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGATAATAATAATAAGGCGTGTGAGAGCCCCGGCGAGATAAGCTCCATCGTGAATTTCAATTCAGTTGAATTGAACGATGACGGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGATGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGTATTCAAGAGGTCTCAAACGACGCCGTTAGTAACTTGCCCTGGATTTTGCCTTTTGGCGGGAAATTGGAGTTCCCGAGACCCCGTGTTAGGGCTCTCCGCCACGTCGACGACGGTAACTGGTGGAATTTTCCTGCCGTCGATATTCTTTCAATATCGCCCAAAATTAACACCAAGCCTCCGCCGGTGGCCGCCGAGAAGAAGATGAAGAAGAAGAAGGTTGCGGCGGCGCCGTCGCCGGTCGTCCTGGAGTTGAAGAACACGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGGATTACGACGGCGTTCGAAACGCTTGGTCTGACAGCGGAACACCGTTCACCGACGATAGCCCCCTCGCCGACGTCCCGGAAAATGACGTCACTGCGCGGTTGTCGCAAATTGATTTGTTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAGGAGAAGCGGCGAACGCGCCTCTTCTCGAAAAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGTACGAGTCAGTTCACAGTTGAGTTGA 1176 0.5221 MSSSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKGKGKFSRPTSENFDYDSSELLLPFRVFDGTASCFLLDQTGPKPMERPKVVSVQEKDNNNKACESPGEISSIVNFNSVELNDDGEESLDAESILDEEIEEGIDSIMGSSIQEVSNDAVSNLPWILPFGGKLEFPRPRVRALRHVDDGNWWNFPAVDILSISPKINTKPPPVAAEKKMKKKKVAAAPSPVVLELKNTELPKPKQGLMLKLDYDGVRNAWSDSGTPFTDDSPLADVPENDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKVRVSSQLS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00556 391 Coils Coil 390 391 - -
Gma17g00556 391 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 386 - -
Gma17g00556 391 PANTHER OS02G0148000 PROTEIN 1 386 - -
Gma17g00556 391 MobiDBLite consensus disorder prediction 24 64 - -
Gma17g00556 391 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Gma17g00556 391 MobiDBLite consensus disorder prediction 24 53 - -
Gma17g00556 391 Pfam CCT motif 347 385 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00556 Gma-Chr17 4583880 4586666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00556 281 385 C2C2-CO-like Transcription Factor Family AT1G68520 40.625 3.56e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma17g00556 CCT 4.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00556 - - gmx:100810303 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00556 17 4583880 4586666 Gma17g00556 17 4583880 4586666 ECH
Gma17g00556 17 4583880 4586666 Gma13g00809 13 22381639 22383367 GST
Gma17g00556 17 4583880 4586666 Gma15g01549 15 14656192 14658256 PCT
Gma17g00556 17 4583880 4586666 Gma09g00542 09 5659003 5661024 PCT
Gma15g01549 15 14656192 14658256 Gma17g00556 17 4583880 4586666 PCT
Gma09g00542 09 5659003 5661024 Gma17g00556 17 4583880 4586666 PCT