Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00552 ATGGATGTTTCGAGGAAGCAGCAAATTAAACATCGGAAACAAAGAGAGAGAGAGAGAGAGAGCATGACAGACGAACAGCAACATCAATTCCCATCATCGATGGTCTCCTCTCCCCTATATATACATATATACCACGCAGAAGTGGAAAATAAAAGTGAAGAAAACAGACCAAAAATAGAAAGAAAGAGAAATACCAAAACCTTGGCGCATCATATTCTTTATTCCCTCACTTGGATCGTTAATTCCGCGAACGAGCTTCTGCCCTTCAAATTAACCATGGAGAATATTGGTGAGGAGTACGGCTACTGGCCGGAGAACGACATGCTTTTCCAAAACGAAGACCTTGGCAGCTGGGCGATAATGGATGAGGCAGCGTTATCAGGGTCAGGGTACTATGATTCAAGCTCCCCGGACGGTACTGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTTGCTCTAAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGACCAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTTGAATCTGGGAATAAACTCAAAAACCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCCAAGAAGAAGAGAACAGAACAGCTATTCGGTTCTGTCAGTTCAAGAAATTCTCCAATTGAAATAATTGACCTGAGGGTAACATACATGGGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTGTGTGCGGTGTTCGAATCTTTAAAGCTGAAAGTCATTACGGCCAATATCACTTCTTTTTCAGGCACGCTTCTGAAGACAGTCTTCATCCAGGGGGCACCCACGTTGTGCCTCTCTTAA 960 0.4385 MDVSRKQQIKHRKQRERERESMTDEQQHQFPSSMVSSPLYIHIYHAEVENKSEENRPKIERKRNTKTLAHHILYSLTWIVNSANELLPFKLTMENIGEEYGYWPENDMLFQNEDLGSWAIMDEAALSGSGYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLFALRAVVPNITKMDKASIIKDAIEYIQHLHDQEKRIQAEILDLESGNKLKNPTYEFDQDLPILLRSKKKRTEQLFGSVSSRNSPIEIIDLRVTYMGEKTFVVSLTCSKRTDTMVKLCAVFESLKLKVITANITSFSGTLLKTVFIQGAPTLCLS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00552 319 Gene3D - 143 212 IPR036638 GO:0046983
Gma17g00552 319 PANTHER TRANSCRIPTION FACTOR BHLH35 93 311 - -
Gma17g00552 319 MobiDBLite consensus disorder prediction 1 25 - -
Gma17g00552 319 MobiDBLite consensus disorder prediction 1 31 - -
Gma17g00552 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 93 311 - -
Gma17g00552 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 209 IPR036638 GO:0046983
Gma17g00552 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Gma17g00552 319 SMART finulus 151 200 IPR011598 GO:0046983
Gma17g00552 319 Pfam Helix-loop-helix DNA-binding domain 152 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00552 Gma-Chr17 4555162 4559599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00552 93 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.929 3.05e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00552 HLH 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00552 - - gmx:100803916 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00552 17 4555162 4559599 Gma17g00552 17 4555162 4559599 ECH
Gma17g00552 17 4555162 4559599 Gma13g00813 13 22410511 22417937 GST
Gma17g00552 17 4555162 4559599 Gma15g01552 15 14730461 14738740 PCT
Gma17g00552 17 4555162 4559599 Gma09g00546 09 5709501 5717655 PCT
Gma15g01552 15 14730461 14738740 Gma17g00552 17 4555162 4559599 PCT
Gma09g00546 09 5709501 5717655 Gma17g00552 17 4555162 4559599 PCT