Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00545 ATGAACCATCGCTTATATGGTGTTGCAGATGTTATTGTGAATGCAATCAGCTGCAAATTCTCTTATTTTCCCGTTTTTGGAAGTATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGCGTGATTTAGAAGCTGGGTCTCCTGCTAGCTTCTCTGCTGATTTTGATGATGGAGACGTTTCTGCTGATCCATTTGACGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGTTGGAGGCAAGCCGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGAAGAAACGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCCGCATATCGATTCAAGGAAGCTGGGCAAATGAATGGAATTGTAAAATCTCCTTCAAGCTCCACTGGAGAATTTTCGGTTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGTGATGCTACTGCTCTACAGGAAAATGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAGAGTGATGATGCTGACTTGCTGAAACGGAGGAGTGCATTCGGCTCCAACAACTACCCACGAAAGAGTGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGACGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGACCTAAATGAGCACAAaagaaacatacatttggaggttattcgAGATGGTAGAAGAGTCGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAATCAGGTCCCTGCTGATGGAGTTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCGAAAAAAATTCTAGTGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGCTGGTAACAGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCCAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTTGCTACCTTAATTGGTATCGTTGGACTCTCTGTGGCTGTCGTTGTTCTGATGGTGCTACTGGCCAGATATTTCTCTGGGCACACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAAAGTTGGTGATGCTATTGATGGAGTAATTAAGATATTCACTATCGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGGATTGGTGGTGGGAAGAAGATTGCTGATCCTCATGATGTATCACAGTTCTCTCGTATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTATATATCCCTGAGGGTGGTAATGATGTTGAGATTTCTGGATCACCAACAGAAAAGGCAATATTAGAGTGGGGAGTTAAGCTTGGGATGAATTTTGACACTGCCAGATCAAAGTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACATGGGTGTCTGACTCTGAAGTCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACACGGTATTTTGATGCTAATGATCAGTTGGTGGAGATGGATGAAGCAAAGatgtcaacttttaaaaaagctattgaagatatggctgctgatagtctacgttgtgttgcgattgcctatagatcatatgaaatgaagaatgttccaactagtgaggaagaacttgctcactggtcattaccagaggatgatcttgttttattggctattattggcctaaaggatccttgtcgacctggtgtcaaagatgcagtgcagctttgccaaaaggctggggttgagGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAGAGCAATTGCTGTGGAATGTGGAATACTTGGTTCAATTTCTGATGCTACAGAACCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCAGATATTGTTGAAAAGATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAACGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAATGTTGTTGCTGCATTTACCACCGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCCTGATGGATCAAAGTCCAAAGGGTCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCTATGTACCAAGTGTCCGTCTTGCTTATACTTAATTTCCGAGGTGTGAGCTTACTGGCTTTGAGGGATGAGCCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTTAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCTGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTCATGGGGATAGTAGGAATAACTGTTGTGCTTCAGATTGTCATCATTGAATATCTCGGGAAGTTCACTAAAACAGCCAAGCTTAATTGGAAGCAGTGGCTCATTTCAGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTAGGAAAATTGATACCAGTACCAGAGGCAGAACTCAGTAACTTTTTCCGAAAATGTCTTCGTAGACAAAATTAA 3309 0.3892 MNHRLYGVADVIVNAISCKFSYFPVFGSMSFSKGSPGSQTPRDLEAGSPASFSADFDDGDVSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQMNGIVKSPSSSTGEFSVGQEQLSSISRDRDATALQENGGVVGLSHLLKTNLEKGIQSDDADLLKRRSAFGSNNYPRKSGRSFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIKEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSSDPFLISGCKVADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVVVLMVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAWIGGGKKIADPHDVSQFSRMLCSLLIEGVAQNTNGSVYIPEGGNDVEISGSPTEKAILEWGVKLGMNFDTARSKSSIIHVFPFNSDKKRGGVATWVSDSEVHIHWKGAAEIVLACCTRYFDANDQLVEMDEAKMSTFKKAIEDMAADSLRCVAIAYRSYEMKNVPTSEEELAHWSLPEDDLVLLAIIGLKDPCRPGVKDAVQLCQKAGVEVKMVTGDNVKTARAIAVECGILGSISDATEPIIIEGKRFRALTDEGRADIVEKILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFTTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQSPKGRREPLVSNIMWRNLLIQAMYQVSVLLILNFRGVSLLALRDEPNRPAIKVKNSLIFNAFVLCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIIEYLGKFTKTAKLNWKQWLISVIIAFISWPLAVVGKLIPVPEAELSNFFRKCLRRQN 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00545 1102 PRINTS Sodium/potassium-transporting ATPase signature 505 526 - -
Gma17g00545 1102 PRINTS Sodium/potassium-transporting ATPase signature 255 275 - -
Gma17g00545 1102 PRINTS Sodium/potassium-transporting ATPase signature 632 650 - -
Gma17g00545 1102 Gene3D - 75 130 - -
Gma17g00545 1102 PRINTS P-type cation-transporting ATPase superfamily signature 821 840 - -
Gma17g00545 1102 PRINTS P-type cation-transporting ATPase superfamily signature 336 350 - -
Gma17g00545 1102 PRINTS P-type cation-transporting ATPase superfamily signature 845 857 - -
Gma17g00545 1102 PRINTS P-type cation-transporting ATPase superfamily signature 736 746 - -
Gma17g00545 1102 PRINTS P-type cation-transporting ATPase superfamily signature 512 526 - -
Gma17g00545 1102 PRINTS P-type cation-transporting ATPase superfamily signature 714 725 - -
Gma17g00545 1102 PANTHER CALCIUM-TRANSPORTING ATPASE 60 1097 - -
Gma17g00545 1102 SUPERFAMILY HAD-like 510 926 IPR036412 -
Gma17g00545 1102 Gene3D - 522 721 IPR023299 GO:0000166
Gma17g00545 1102 SUPERFAMILY Calcium ATPase, transduction domain A 290 385 IPR008250 -
Gma17g00545 1102 SMART Cation_ATPase_N_a_2 171 242 IPR004014 -
Gma17g00545 1102 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 789 901 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g00545 1102 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 452 555 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g00545 1102 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 257 427 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma17g00545 1102 Gene3D - 220 1075 - -
Gma17g00545 1102 Gene3D - 193 388 - -
Gma17g00545 1102 Pfam E1-E2 ATPase 290 490 - -
Gma17g00545 1102 ProSitePatterns E1-E2 ATPases phosphorylation site. 514 520 IPR018303 -
Gma17g00545 1102 SFLD p-type atpase 494 873 IPR044492 -
Gma17g00545 1102 SUPERFAMILY Calcium ATPase, transmembrane domain M 171 1084 IPR023298 -
Gma17g00545 1102 Pfam Ca2+-ATPase N terminal autoinhibitory domain 63 106 IPR024750 GO:0005516
Gma17g00545 1102 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 519 718 IPR023299 GO:0000166
Gma17g00545 1102 Pfam haloacid dehalogenase-like hydrolase 509 835 - -
Gma17g00545 1102 PANTHER CATION TRANSPORTING ATPASE 60 1097 - -
Gma17g00545 1102 Gene3D - 509 866 IPR023214 -
Gma17g00545 1102 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 147 1085 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma17g00545 1102 Pfam Cation transporter/ATPase, N-terminus 170 236 IPR004014 -
Gma17g00545 1102 SFLD Haloacid Dehalogenase 494 873 - -
Gma17g00545 1102 CDD P-type_ATPase_Ca_PMCA-like 194 954 - -
Gma17g00545 1102 MobiDBLite consensus disorder prediction 37 58 - -
Gma17g00545 1102 Pfam Cation transporting ATPase, C-terminus 906 1083 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00545 Gma-Chr17 4466032 4488053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00545 30 1095 Primary Pumps ATPases AT5G57110 70.533 0.0 1528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00545 K01537 - gmx:100790157 2048.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00545 17 4466032 4488053 Gma17g00545 17 4466032 4488053 ECH
Gma17g00545 17 4466032 4488053 Gma13g00819 13 22488390 22508519 GST
Gma17g00545 17 4466032 4488053 Gma15g01560 15 14996624 15020366 PCT
Gma17g00545 17 4466032 4488053 Gma09g00553 09 5909228 5925819 PCT
Gma15g01560 15 14996624 15020366 Gma17g00545 17 4466032 4488053 PCT
Gma09g00553 09 5909228 5925819 Gma17g00545 17 4466032 4488053 PCT