Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00539 ATGGCAGTAGATCTGGCAAATATTAGGATGGAAGAGAATATGGCGATTCAAGAAGCAGCTTCCGCTGGGTTGAAGAGTATGGAGCATCTGATTCGCGTCCTTTCTTCTCAAATCCCTTCTGCTTCGTCTTCTTCTTCTAACGCACACCACCACCGTCTTAATCTCAACCACCTTGACTGCGCGGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACCGGCCACGCTCGCTTTCGTCGCGCACCTTCTCATCCTTCTCCTTCAATTTCTCCCTCTCAAACTCAACTTCAGCCACAACCACAACCACCACAGACGCTGACTCTTGATTTTGCAAAACCTGTTATGGTAAAGTCAAATCCCAACCCTAACCCTTCTTCTACCGATTTGTCGGTTTCTCAATATTCTAAGACCAAGGACACAACCACCTTTAGTATATCCCCTCCCATGTCCACCACCACTTCTTCCTTCCTGTCATCCATCACCGCCGACGGCAGCGTCTCTGACGGCAAGATCGGCCCCGCCATCCTCGCCGCCGGCAAGCCTCCTCTATCCTCATCCCACCGGAAAAGGTGTCACGACGCCACTCTCTCCGCCGGAAAAGCCTCTTCCTCCGCTCACTGCCATTGCTCCAAGAGAAGGAAATCTCGTGTGAAACGAATGATACGTGTGCCGGCGATAAGTTCGAAGATTGCCGATATCCCAGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCAATCAAGGGATCACCTTACCCACGAGGGTATTATAAGTGCAGTAGCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAACCGCGTCTGCCGGAAACTTCTGCCGGCGCCGCCGCGGATTTTGTCTCTCAGCCTGTTTAA 966 0.5217 MAVDLANIRMEENMAIQEAASAGLKSMEHLIRVLSSQIPSASSSSSNAHHHRLNLNHLDCAEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSISPSQTQLQPQPQPPQTLTLDFAKPVMVKSNPNPNPSSTDLSVSQYSKTKDTTTFSISPPMSTTTSSFLSSITADGSVSDGKIGPAILAAGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETSAGAAADFVSQPV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00539 321 MobiDBLite consensus disorder prediction 296 321 - -
Gma17g00539 321 MobiDBLite consensus disorder prediction 126 141 - -
Gma17g00539 321 Gene3D WRKY domain 228 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma17g00539 321 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 311 - -
Gma17g00539 321 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g00539 321 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g00539 321 SUPERFAMILY WRKY DNA-binding domain 240 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma17g00539 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 311 IPR044810 GO:0003700
Gma17g00539 321 MobiDBLite consensus disorder prediction 86 114 - -
Gma17g00539 321 MobiDBLite consensus disorder prediction 122 141 - -
Gma17g00539 321 Pfam Plant zinc cluster domain 196 240 IPR018872 -
Gma17g00539 321 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g00539 321 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00539 Gma-Chr17 4422176 4424101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00539 1 307 WRKY Transcription Factor Family AT2G24570 49.852 3.38e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma17g00539 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00539 - - gmx:732589 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00539 17 4422176 4424101 Gma17g00539 17 4422176 4424101 ECH
Gma17g00539 17 4422176 4424101 Gma13g00822 13 22527082 22528331 GST
Gma01g01920 01 54730036 54732795 Gma17g00539 17 4422176 4424101 PCT
Gma11g00485 11 4054124 4055815 Gma17g00539 17 4422176 4424101 PCT
Gma17g00539 17 4422176 4424101 Gma15g01567 15 15129199 15130879 PCT
Gma17g00539 17 4422176 4424101 Gma09g00559 09 6000550 6002307 PCT
Gma15g01567 15 15129199 15130879 Gma17g00539 17 4422176 4424101 PCT
Gma09g00559 09 6000550 6002307 Gma17g00539 17 4422176 4424101 PCT