Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00532 atggaagacaataaTGAAGAATGCATCGCGGGGCTATGTTTGGGACTGGGACTGGGATTGGGATCAGGACATGTTCCAAAGAAGAATAAGCAGAAAGAGAACAAGGCTGTGGTGTGCCTAGACCTAGCGTTTGAGCTTTGTCCAAAAGGAGAAAAAGCCGTTAATAACGTGAATCATCATCATGATAAGGTAGAGAGAATCAGCTTGGAGAGAATCCACGACTACCCCAATGAAAAGAGCACTGATTCTGATAACAGCAACAACAACGGATGCAGAAAGAAACTGAGGCTTTCCAAGGATCAATCATCCATGCTTGAGAACAGCTTCAAACAGCATAGCACTCTTAATCCGGTCCAGAAACAAGCACTTGCTGATCAATTGAATTTAAAAACTAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGAACCGCGAGTTGCTGAAAAAACACTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCAGTTAAGGTTGGACCGTCGCCACCATGCATTCAACTATCCAAAACGGCGACCCTGACTATGTGTTCTTTGTGCCAGAAACTAGTAAATTAA 630 0.4206 MEDNNEECIAGLCLGLGLGLGSGHVPKKNKQKENKAVVCLDLAFELCPKGEKAVNNVNHHHDKVERISLERIHDYPNEKSTDSDNSNNNGCRKKLRLSKDQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVNRELLKKHCQNLSDENKRLKKELQELRAVKVGPSPPCIQLSKTATLTMCSLCQKLVN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00532 209 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Gma17g00532 209 SMART HOX_1 90 152 IPR001356 GO:0003677
Gma17g00532 209 Coils Coil 140 181 - -
Gma17g00532 209 MobiDBLite consensus disorder prediction 73 93 - -
Gma17g00532 209 CDD homeodomain 92 149 IPR001356 GO:0003677
Gma17g00532 209 SUPERFAMILY Homeodomain-like 79 149 IPR009057 -
Gma17g00532 209 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 11 206 - -
Gma17g00532 209 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Gma17g00532 209 Gene3D - 96 146 - -
Gma17g00532 209 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Gma17g00532 209 SMART halz 148 192 IPR003106 GO:0006355|GO:0043565
Gma17g00532 209 PANTHER - 11 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00532 Gma-Chr17 4365908 4367271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00532 83 205 Homeobox Transcription Factor Family AT4G16780 62.602 5.33e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma17g00532 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00532 K09338 - gmx:100813377 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00532 17 4365908 4367271 Gma13g00828 13 22575832 22577358 GST
Gma17g00532 17 4365908 4367271 Gma15g01572 15 15220272 15221840 PCT
Gma17g00532 17 4365908 4367271 Gma09g00566 09 6060050 6061297 PCT
Gma15g01572 15 15220272 15221840 Gma17g00532 17 4365908 4367271 PCT
Gma09g00566 09 6060050 6061297 Gma17g00532 17 4365908 4367271 PCT