Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00529 ATGCATGCTTCTGTCCCCAAGATGCCTCGAAGAATACTCCCAGAGAAACCTCCTATTCCTTCACACCATGACCCTGGAGTGTTTTTCTTCCTTGGAGGGATTGTAGTGCTCGTCATATTGCTGATTCTTGTGTTTATATTTTGGAGGCGTATTAAACGGCCAGCAAAGGTGATGGAGAACACAGTTCTAACAAGTCAGCAGCATGGGAAATATATTGAACCGTCAGAGGTGATGAAGATGATAGTACCAAATATAAAACAGCCAGGTAGACCAATGGAGTTCATTAGTGGGAACCTTCGGACAATTAGCTACTTTGACTTCCGGACATTGAGGAGAGCCACTAAGAATTTCCATCCTCGAAATCTTCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGggaaagttggcagatggaaggcttattgccgtcaagacattgtctcttgacaagtctcaacaaggtgaaaaagaatttctggcagaagtgagaatgatcacaagcattcaacacaaAAATCTGGTTCGCCTTATTGGATGTTGCACAGATGGCCCTCAAAGGATACTTGTGTACGAATACATGAAGAACAGAAGTTTAGACCTCATAATATATGGAAAGAGTGATCAATTTCTGAATTGGAGCACTAGATTCCAAATTATTCTTGGTGTAGCACGGGGATTACAATACCTCCACGAGGATTCACATTTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGAGAAGTTTCAGCCTAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAGTTCGCAGGAACATTAGGTTATACAGCTCCTGAGTATGCCATTAGAGGAGAATTGTCTGAAAAGGCAGACATATATAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTTGTAGGAAAAACACAGATCTTACTTTAGCATCAGAAAAACAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGTTGATGGAAATTGTAGATCCAAAGCTGCAAGAGCAAGGCATAGAAGAAAAGGATGTCATGCAAGCATTCCACGTGGCCTTGTTATGCCTTCAGCCACACGCGGATTTGAGGCCTGCCATGTCAGAGATCGTAGCAATGTTGACATTCAAAGTTGAAATGGTTACAGCACCAATGAGGCCAATCTTCGTTGATCGAAGGCGCGTAATGGATGATGAACATCACTCATGGGAAACCATATACGAGGCTTTCACCACTGCAGTGGCATCCCGGCCCACGTAA 1302 0.3925 MHASVPKMPRRILPEKPPIPSHHDPGVFFFLGGIVVLVILLILVFIFWRRIKRPAKVMENTVLTSQQHGKYIEPSEVMKMIVPNIKQPGRPMEFISGNLRTISYFDFRTLRRATKNFHPRNLLGSGGFGPVYQGKLADGRLIAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLIGCCTDGPQRILVYEYMKNRSLDLIIYGKSDQFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLASEKQYLPEYAWKLYEKSMLMEIVDPKLQEQGIEEKDVMQAFHVALLCLQPHADLRPAMSEIVAMLTFKVEMVTAPMRPIFVDRRRVMDDEHHSWETIYEAFTTAVASRPT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00529 433 SUPERFAMILY Protein kinase-like (PK-like) 94 391 IPR011009 -
Gma17g00529 433 PANTHER RECEPTOR-LIKE KINASE 96 404 - -
Gma17g00529 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Gma17g00529 433 SMART serkin_6 117 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00529 433 ProSiteProfiles Protein kinase domain profile. 117 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00529 433 Gene3D Phosphorylase Kinase; domain 1 92 193 - -
Gma17g00529 433 Pfam Protein tyrosine and serine/threonine kinase 121 388 IPR001245 GO:0004672|GO:0006468
Gma17g00529 433 CDD STKc_IRAK 123 389 - -
Gma17g00529 433 Gene3D Transferase(Phosphotransferase) domain 1 194 397 - -
Gma17g00529 433 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 96 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00529 Gma-Chr17 4341851 4345039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00529 105 427 Receptor kinase-like Gene Family AT1G56120 47.853 6.22e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma17g00529 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00529 - - gmx:100812302 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00529 17 4341851 4345039 Gma17g00529 17 4341851 4345039 ECH
Gma17g00529 17 4341851 4345039 Gma15g01575 15 15275586 15280942 PCT
Gma17g00529 17 4341851 4345039 Gma09g00567 09 6075748 6081152 PCT
Gma15g01575 15 15275586 15280942 Gma17g00529 17 4341851 4345039 PCT
Gma09g00567 09 6075748 6081152 Gma17g00529 17 4341851 4345039 PCT