Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00521 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGAAGATCAAAACCACGAGTTCTTCAGTCCAACTCACCACCCTTCCTCTTCGTTTTCTTCTCTATCTTCATATCCTATTCTCTTCAACCCGCCAAATCAAGATCAAGAAGCTCGATCATACTACTGGGAACCAACAAAGCAGTACTTACCAAGTCATGAAGAAGAGACTGAGAAGATTATTCCTTCTAGCGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCACAATAAGGCGACAGTTTGGAAGAAAGCAGAAGAGAGGAATGAAAATCTTGAATCAGTTGCTGCTGAAGATGGTTCGTTGAAGTGGATGCCTGCCAAGATGAGAATTATGCGGAAGATGTTGGTGTCGGATCAAACTGATACATATACTAATTCAGACAACAACACTACGCACAAGTTTGATGATCAGAAACAACAACTGTCGTCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTATTCAAACCACAGTAACAACACTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCAAGACGAGCCATGGCAGCTGCTGCGGCTTCTGCATCGGGAAATGGAACAGTAATTGTGGAAGCTAAGAAATCTGTGAAGGGACGGAACAAGTTGCAGAAGAAGAAAGAGAAGAAGACAAGAACTGAGGGTGCAGCACAGATGAAAAAGAAGCGGAAGCTTGGAGTTGGATCAGCAAAGGCATCTCAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACGTTGCGCTTGAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCATTGA 969 0.4489 MIPAYRHSVSSVMPLDLNEDQNHEFFSPTHHPSSSFSSLSSYPILFNPPNQDQEARSYYWEPTKQYLPSHEEETEKIIPSSGSWDHSVAESEHNKATVWKKAEERNENLESVAAEDGSLKWMPAKMRIMRKMLVSDQTDTYTNSDNNTTHKFDDQKQQLSSPLGTDNSSSNNYSNHSNNTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASASGNGTVIVEAKKSVKGRNKLQKKKEKKTRTEGAAQMKKKRKLGVGSAKASQSRNKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00521 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 218 - -
Gma17g00521 322 MobiDBLite consensus disorder prediction 242 276 - -
Gma17g00521 322 CDD ZnF_GATA 183 215 IPR000679 GO:0006355|GO:0043565
Gma17g00521 322 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 322 - -
Gma17g00521 322 Gene3D - 182 220 IPR013088 GO:0006355|GO:0008270
Gma17g00521 322 SMART GATA_3 178 229 IPR000679 GO:0006355|GO:0043565
Gma17g00521 322 MobiDBLite consensus disorder prediction 139 177 - -
Gma17g00521 322 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Gma17g00521 322 ProSiteProfiles GATA-type zinc finger domain profile. 178 214 IPR000679 GO:0006355|GO:0043565
Gma17g00521 322 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 322 - -
Gma17g00521 322 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00521 Gma-Chr17 4290842 4292937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00521 118 322 C2C2-Gata Transcription Factor Family AT4G26150 43.119 1.14e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma17g00521 GATA 3.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00521 - - gmx:100810698 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00521 17 4290842 4292937 Gma17g00521 17 4290842 4292937 ECH
Gma17g00521 17 4290842 4292937 Gma13g00838 13 22644952 22647043 GST
Gma17g00521 17 4290842 4292937 Gma15g01579 15 15320592 15322311 PCT
Gma17g00521 17 4290842 4292937 Gma09g00570 09 6111900 6114210 PCT
Gma15g01579 15 15320592 15322311 Gma17g00521 17 4290842 4292937 PCT
Gma09g00570 09 6111900 6114210 Gma17g00521 17 4290842 4292937 PCT