Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00517 ATGAATTTCATAGGTACTGCTGGATCATTTAGAGGCGCGGGAACTGGTTCTGTTTCCACACTTAACGGTACGaatgacatcgagaaagcaactgataatttccatgcttcaagaatacctggagagggggtttttggccttgtttacagtggtatccttgaagatgggatgaaagtggcattcaaggttctaaaaagggaggaccctcatggtgatcatgaattcttagctgaagttgagatgcttagtcgtcttcaccatagaaattTGGTCAAGTTAATTGGGGTTGACAGGGAAATCAGCCCCCTTGATTGGGGTGCCCGGATGAAAATAGCTCTTGGAGCAGCTCCTGGTCTTGCTTATCTGCATGAAGATTCAAGTCCTCGTGTTATACATAGGGACTTCAAGTCTAGCAACATATTGTTGGATTGGCTTGAACGGCATCGGATGGGGAGAACAAACACATATCAACTCGTGTCATGGGAAGTTTTGGGAACAACCGAACAAGTGATGAATTTGAATCCATGA 528 0.286 MNFIGTAGSFRGAGTGSVSTLNGTNDIEKATDNFHASRIPGEGVFGLVYSGILEDGMKVAFKVLKREDPHGDHEFLAEVEMLSRLHHRNLVKLIGVDREISPLDWGARMKIALGAAPGLAYLHEDSSPRVIHRDFKSSNILLDWLERHRMGRTNTYQLVSWEVLGTTEQVMNLNP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00517 175 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gma17g00517 175 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Gma17g00517 175 Pfam Protein tyrosine and serine/threonine kinase 41 96 IPR001245 GO:0004672|GO:0006468
Gma17g00517 175 SUPERFAMILY Protein kinase-like (PK-like) 24 143 IPR011009 -
Gma17g00517 175 Gene3D Transferase(Phosphotransferase) domain 1 100 160 - -
Gma17g00517 175 SMART tyrkin_6 34 173 IPR020635 GO:0004713|GO:0006468
Gma17g00517 175 PANTHER OS01G0750732 PROTEIN 95 143 - -
Gma17g00517 175 PANTHER OS01G0750732 PROTEIN 14 96 - -
Gma17g00517 175 ProSiteProfiles Protein kinase domain profile. 34 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00517 175 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 95 143 - -
Gma17g00517 175 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00517 Gma-Chr17 4256089 4257374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00517 25 143 Receptor kinase-like Gene Family AT5G56890 61.379 6.57e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gma17g00517 PK_Tyr_Ser-Thr 7.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00517 - - gsj:114393501 261.922