Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00516 ATGGCCCCCAGAATCCTTCTATGCGGCGACGTTTTAGGGCGCCTCAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCGCTCTTGTGCGTGGGTCAGTTCTTCCCTGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGATCTCACTTTCCTCTTCCGACGTACTTCATCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCTTGCATGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGACGGCTTCAAGGTTTGCCACAACTTGTATTGGCTGAAAGGCAGTGGCAAATTCCCTCTCTTTGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCATCCAGTGGTCAGCAGTTTGGAAATTACACTGAAGATGATGTTGATGCATTACGCGCAATTGCCGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAACGAATGGCCGAATGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCTGGACTCTCTGATGGCAGTGATTCAACTGTATCGGAATTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACCAAAGGCATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCCGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCGCCATACACATTCAAGGAGAAAAGAACTTCTCCAATGGATTCAGCAAAGAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTGCTCAAAAGCGACAAAAACATGAAGCTGGACATGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGCTCTTGTCCACGAGGAGAGAAGTGCAATTTTCAACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAATAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGCAACAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGCCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCGAATGTAGAGTCACATTTAATCATAAGCATTGCGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCACGTACTGATAATACCAGTCGAGCATATGCCTAGTACCTTATCTATGCCTCCTGAATCTGAAATAGAGCTCTCTCGGTTTCAGAACAGTCTCAGGAGTTACTGCAAGAGCCAAGAGAAGGAATTCATCTTTTTTGAGTGGGTCTCTATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGTTGAGAAAGTTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTGGCTAAGAAATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACACAAATTGATGGGGATTCAAGTTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCTCAATTTGGTCGTGAGGTTCTTGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAAAGGAAATTGTTGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG 1800 0.4456 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHFPLPTYFIGDYGVAAPKLLLHASKDSANQGFKMDGFKVCHNLYWLKGSGKFPLFGLSVAYLSGRKSSSGQQFGNYTEDDVDALRAIAEEPGVVDLFLTNEWPNGVTNRAADSDIPAGLSDGSDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTFKEKRTSPMDSAKRSSDSISDPQYWRYDVAQKRQKHEAGHGDKLCFKFVSSGSCPRGEKCNFQHDTDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGNRLPSRRPGSGRPKECWFCLSSPNVESHLIISIAENYYLALAKGPLVEDHVLIIPVEHMPSTLSMPPESEIELSRFQNSLRSYCKSQEKEFIFFEWVSIRGTHANLQAIPIPSSKAIMVEKVFNLAAQKLGFEFVAKKFDSISDGRKFLKTQIDGDSSLFYAQIPGGTILLHHVEEKEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEKEIVEDFKSRFQEYDPNC 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00516 599 Gene3D - 381 498 IPR036265 -
Gma17g00516 599 Gene3D - 302 380 - -
Gma17g00516 599 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 598 IPR040194 -
Gma17g00516 599 SUPERFAMILY HIT-like 384 452 IPR036265 -
Gma17g00516 599 CDD MPP_CWF19_N 6 230 - -
Gma17g00516 599 SUPERFAMILY CCCH zinc finger 310 336 IPR036855 GO:0046872
Gma17g00516 599 ProSiteProfiles Zinc finger C3H1-type profile. 312 335 IPR000571 GO:0046872
Gma17g00516 599 PANTHER CWF19-LIKE PROTEIN 1 1 598 - -
Gma17g00516 599 SMART c3hfinal6 341 366 IPR000571 GO:0046872
Gma17g00516 599 SMART c3hfinal6 309 334 IPR000571 GO:0046872
Gma17g00516 599 Pfam Protein similar to CwfJ C-terminus 2 507 596 IPR006767 -
Gma17g00516 599 ProSiteProfiles Zinc finger C3H1-type profile. 344 367 IPR000571 GO:0046872
Gma17g00516 599 Pfam Protein similar to CwfJ C-terminus 1 382 493 IPR006768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00516 Gma-Chr17 4250038 4254606 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma17g00516 CwfJ_C_1 2.1e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00516 K24939 - gmx:100782106 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00516 17 4250038 4254606 Gma17g00516 17 4250038 4254606 ECH
Gma17g00516 17 4250038 4254606 Gma13g00842 13 22700151 22704430 GST