Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00510 atgcactccatggatggtgttttcgccctccctgaagcagccagagctgattgtctccgctctctggtgcaatcttgtggctgcacttacgtttctctgtggcaatatgactccaatttatccaaTTTGTTCTTCTTAGATGGTTTCTACGATGCAACGAACAACCAACAAAGCTCTTCTTTAGGGAGTGTAGCTGAAAGGCTTTTACACCAATATCGGGCTTTAACGTTTGATGTCAATGATCATGAATATGTTCCTGGGGTCGTTTTCAGGAATCAGCTTCCCTACATAGAGCTGCAACTATTGGATCTTCTAAGACTGACTTCGACAGAAATACAAACAAAATTCTTTCAAATTGCTGTTTTCATGGGGTGCAAAAACGGAGAAATTGAGCTTGGGTTCTCCAACATTTCTCAAGTTGACATTCAGACAACACTTAAAAATTTATTTCCGCAAGATTTCTATATACATTCACAATCAACAACTGATCAAAATCCACCTTTATCATCATCATCATCATCTTCTTCTTTCATGTCATTATCCACGGGTAGGCCTGATCAATGTTCATCTTCATTATTACTCAGTAGTATTCCGGGAACTTCTCAGTACCACTTTCCTCAAACCCTTCCCACACAAACACAAACACAAACTCAAACTAGCCCACAGTACCAAGCATTAGATTTAGTTCCAGTCATTCCAAGTTATTTTCCCACACCAGAGGGTGAACATGAAGCAATAGTAAAAGCATTTATCAGTGTTATGTCTTCTTCTTCAACTTCAACTTCTCAGCAGCATCAACCCCACCAAATTGTGCCTAAGTATACTTCAGTGGTACATCCAGGAGCTACCGCTTTCAATAAATGTAGACCAGATACATTGAACCCAAATATAACACCCCAATTGGGATCCAATTTTCGCAGCCAAAGCCTACAGAAAAGATCATTTGAATTCTTTAGAAACTTAAATAATTTAACGAGAATGAGAGAACGCGTTACTCAACCTGCACCACGTCCCATTAGTACCCAGCACCAGTACCAGCAGCATACCATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGAGAATTTTCAGGCACTTAGAACACTTCTTCCTCCAGGAACTAAGAAAAACAAAGCAACGATCCTTACAACAGCAACGGAGACAATGAGATCATTGATGGATGAAATTGAAAAGCTTAACATGAGAAATCAGCAGTTGATGACAGTTTTATCAGTCAAAGAAGCTACAGCTACTAGTACTGAAGAAAACAAAGCTAAACCTAGCTCCTCATATGAAAGATTGAATGTTGGGGTCTCGCATGTATCGGAATCAAGTTCATCAGAAGAGCAAATGGTGAACTTGCAAGTAACAGTGAGAGGAGAAAGTTGTCTAGTTGATCTATTGATTCAGTTATTGGAATTCTTAGAAAGGGTTCAGAACGTAAACTTTGTTTCCATGGACGCAAACAACCATATTACAGGAGAGACAGCCATTAACCAATTAACCTTCAGACTGAGGATAATTGAGGGCATTGAATGGGACGAGCATGCCTTCGAGGAAGCAGTAAGAAGAGTGGCTGCTGACACAATACAATGGCAACCACTGGAGCAATAA 1614 0.3649 MHSMDGVFALPEAARADCLRSLVQSCGCTYVSLWQYDSNLSNLFFLDGFYDATNNQQSSSLGSVAERLLHQYRALTFDVNDHEYVPGVVFRNQLPYIELQLLDLLRLTSTEIQTKFFQIAVFMGCKNGEIELGFSNISQVDIQTTLKNLFPQDFYIHSQSTTDQNPPLSSSSSSSSFMSLSTGRPDQCSSSLLLSSIPGTSQYHFPQTLPTQTQTQTQTSPQYQALDLVPVIPSYFPTPEGEHEAIVKAFISVMSSSSTSTSQQHQPHQIVPKYTSVVHPGATAFNKCRPDTLNPNITPQLGSNFRSQSLQKRSFEFFRNLNNLTRMRERVTQPAPRPISTQHQYQQHTISERRRREKLNENFQALRTLLPPGTKKNKATILTTATETMRSLMDEIEKLNMRNQQLMTVLSVKEATATSTEENKAKPSSSYERLNVGVSHVSESSSSEEQMVNLQVTVRGESCLVDLLIQLLEFLERVQNVNFVSMDANNHITGETAINQLTFRLRIIEGIEWDEHAFEEAVRRVAADTIQWQPLEQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00510 537 Pfam Helix-loop-helix DNA-binding domain 346 392 IPR011598 GO:0046983
Gma17g00510 537 CDD bHLH_AtbHLH_like 348 399 IPR045239 -
Gma17g00510 537 SMART finulus 349 398 IPR011598 GO:0046983
Gma17g00510 537 Coils Coil 382 409 - -
Gma17g00510 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 409 IPR036638 GO:0046983
Gma17g00510 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Gma17g00510 537 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 528 IPR044658 -
Gma17g00510 537 Gene3D - 340 416 IPR036638 GO:0046983
Gma17g00510 537 MobiDBLite consensus disorder prediction 160 183 - -
Gma17g00510 537 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00510 Gma-Chr17 4194557 4197880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00510 4 528 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.263 1.59e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00510 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00510 - - gmx:102670282 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00510 17 4194557 4197880 Gma17g00510 17 4194557 4197880 ECH
Gma17g00510 17 4194557 4197880 Gma13g00853 13 22781926 22788734 GST
Gma17g00510 17 4194557 4197880 Gma15g01595 15 15661815 15667235 PCT
Gma17g00510 17 4194557 4197880 Gma09g00582 09 6352660 6357432 PCT
Gma15g01595 15 15661815 15667235 Gma17g00510 17 4194557 4197880 PCT
Gma09g00582 09 6352660 6357432 Gma17g00510 17 4194557 4197880 PCT