Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00507 ATGGGGGGAGAAGAAGTAGCAAGAGTCAAAGCAGAGTTGTTCGACGACAACGAAAGCGATCGCAACGACGACGACGTTTTGAGCGAGAGCAAGGACTCGGGAGTGACGACGGCTCACGCAGTGAAAGAAGAGATGGATGACGGCGCCGCTAACTGGTCTTCGTCGTCGTCGACTTCGCCCAAACCGATGGAAGGGTTGCACGAGGTGGGCCCCCCTCCGTTCCTGAAGAAGACGTTTGAAATGGTGGAGGACCCTCACACCAACCCCATTGTGTCGTGGAGCCAAACTCGCCATAGTTTCGTCGTTTGGGACTCGCACGAGTTCTCCAAAACCCTTCTCCCAAAGTACTTCAAGCACAGTAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGCTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGGAGTAAGTGCAACAAACTGCATCAGGGAGCATTCAATATGATGAAGCCAGACGTGGATTCTGAAGTGGAGAAGCTGAAGAAAGACCAGAACATTTTGAAGGTGGAGATTCTGAAGCTGAGGCAGCAGCAGGAAAATTCTCATGTTCAGCTCACAAATGTTCAGGAGAGAATTCGGTGTGCAGAGATGAAGCAGTTTCAGATGATGTATTTCCTCACCAGAATGGCTAGAAGGCCTGCGTTTGTTGAGCAGTTAGTCCATAAGATTAGGCGAAAAAGAGAGATTGATGGTAATGACATGGTTAAGAGGCCTAGATTGATGGGAAATCCGTGCCATGTACCCTTCCCTAAGACAATGGAAACAACACCTAATTTTGATTATAGACACCAACAAGGTCATAAACAATTTGCAACATTGCAATCTGAGCTCAATGTGACAGAAGTGAACTCCAGTAGGATGGAGCACCCAACTCCCTCTCCTTTAGAAGATGAATTAGGCAACTCTTTGCAAGGGTTAAGGGCTCATGGTTGTTCTAGAGCAAGGGCACAAGATGCATCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGAGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCCAATATCTATCTTGAATTAGAGGATTTGATTACTAAGCCTACAGATTGGTCTGTTGGATCTGCAAGTGGATTGGTGGAACAAACTAGTTGA 1215 0.4609 MGGEEVARVKAELFDDNESDRNDDDVLSESKDSGVTTAHAVKEEMDDGAANWSSSSSTSPKPMEGLHEVGPPPFLKKTFEMVEDPHTNPIVSWSQTRHSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKCNKLHQGAFNMMKPDVDSEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAEMKQFQMMYFLTRMARRPAFVEQLVHKIRRKREIDGNDMVKRPRLMGNPCHVPFPKTMETTPNFDYRHQQGHKQFATLQSELNVTEVNSSRMEHPTPSPLEDELGNSLQGLRAHGCSRARAQDASSSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDWSVGSASGLVEQTS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00507 404 ProSitePatterns HSF-type DNA-binding domain signature. 113 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g00507 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 45 388 IPR027725 -
Gma17g00507 404 SUPERFAMILY "Winged helix" DNA-binding domain 70 163 IPR036390 -
Gma17g00507 404 Pfam HSF-type DNA-binding 74 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g00507 404 Gene3D - 67 164 IPR036388 -
Gma17g00507 404 SMART hsfneu3 70 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g00507 404 MobiDBLite consensus disorder prediction 24 46 - -
Gma17g00507 404 MobiDBLite consensus disorder prediction 1 74 - -
Gma17g00507 404 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 45 388 - -
Gma17g00507 404 MobiDBLite consensus disorder prediction 1 17 - -
Gma17g00507 404 Coils Coil 185 205 - -
Gma17g00507 404 PRINTS Heat shock factor (HSF) domain signature 74 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g00507 404 PRINTS Heat shock factor (HSF) domain signature 112 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma17g00507 404 PRINTS Heat shock factor (HSF) domain signature 125 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00507 Gma-Chr17 4173262 4175597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00507 60 402 HSF AT2G26150 42.000 1.74e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma17g00507 HSF_DNA-bind 1.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00507 17 4173262 4175597 Gma17g00507 17 4173262 4175597 ECH
Gma17g00507 17 4173262 4175597 Gma13g00856 13 22814017 22816053 GST