LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g00507	ATGGGGGGAGAAGAAGTAGCAAGAGTCAAAGCAGAGTTGTTCGACGACAACGAAAGCGATCGCAACGACGACGACGTTTTGAGCGAGAGCAAGGACTCGGGAGTGACGACGGCTCACGCAGTGAAAGAAGAGATGGATGACGGCGCCGCTAACTGGTCTTCGTCGTCGTCGACTTCGCCCAAACCGATGGAAGGGTTGCACGAGGTGGGCCCCCCTCCGTTCCTGAAGAAGACGTTTGAAATGGTGGAGGACCCTCACACCAACCCCATTGTGTCGTGGAGCCAAACTCGCCATAGTTTCGTCGTTTGGGACTCGCACGAGTTCTCCAAAACCCTTCTCCCAAAGTACTTCAAGCACAGTAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGCTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGGAGTAAGTGCAACAAACTGCATCAGGGAGCATTCAATATGATGAAGCCAGACGTGGATTCTGAAGTGGAGAAGCTGAAGAAAGACCAGAACATTTTGAAGGTGGAGATTCTGAAGCTGAGGCAGCAGCAGGAAAATTCTCATGTTCAGCTCACAAATGTTCAGGAGAGAATTCGGTGTGCAGAGATGAAGCAGTTTCAGATGATGTATTTCCTCACCAGAATGGCTAGAAGGCCTGCGTTTGTTGAGCAGTTAGTCCATAAGATTAGGCGAAAAAGAGAGATTGATGGTAATGACATGGTTAAGAGGCCTAGATTGATGGGAAATCCGTGCCATGTACCCTTCCCTAAGACAATGGAAACAACACCTAATTTTGATTATAGACACCAACAAGGTCATAAACAATTTGCAACATTGCAATCTGAGCTCAATGTGACAGAAGTGAACTCCAGTAGGATGGAGCACCCAACTCCCTCTCCTTTAGAAGATGAATTAGGCAACTCTTTGCAAGGGTTAAGGGCTCATGGTTGTTCTAGAGCAAGGGCACAAGATGCATCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGAGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCCAATATCTATCTTGAATTAGAGGATTTGATTACTAAGCCTACAGATTGGTCTGTTGGATCTGCAAGTGGATTGGTGGAACAAACTAGTTGA	1215	0.4609	MGGEEVARVKAELFDDNESDRNDDDVLSESKDSGVTTAHAVKEEMDDGAANWSSSSSTSPKPMEGLHEVGPPPFLKKTFEMVEDPHTNPIVSWSQTRHSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKCNKLHQGAFNMMKPDVDSEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAEMKQFQMMYFLTRMARRPAFVEQLVHKIRRKREIDGNDMVKRPRLMGNPCHVPFPKTMETTPNFDYRHQQGHKQFATLQSELNVTEVNSSRMEHPTPSPLEDELGNSLQGLRAHGCSRARAQDASSSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDWSVGSASGLVEQTS	404

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma17g00507	404	ProSitePatterns	HSF-type DNA-binding domain signature.	113	137	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Gma17g00507	404	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	45	388	IPR027725	-
Gma17g00507	404	SUPERFAMILY	"Winged helix" DNA-binding domain	70	163	IPR036390	-
Gma17g00507	404	Pfam	HSF-type DNA-binding	74	163	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Gma17g00507	404	Gene3D	-	67	164	IPR036388	-
Gma17g00507	404	SMART	hsfneu3	70	163	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Gma17g00507	404	MobiDBLite	consensus disorder prediction	24	46	-	-
Gma17g00507	404	MobiDBLite	consensus disorder prediction	1	74	-	-
Gma17g00507	404	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-9	45	388	-	-
Gma17g00507	404	MobiDBLite	consensus disorder prediction	1	17	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g00507	Gma-Chr17	4173262	4175597	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma17g00507	60	402	HSF	AT2G26150	42.000	1.74e-81	252

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gma17g00507		HSF_DNA-bind	1.5e-32	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g00507	K09419		-	gmx:100778060	795.423

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma17g00507	17	4173262	4175597	Gma17g00507	17	4173262	4175597	ECH
	Gma17g00507	17	4173262	4175597	Gma13g00856	13	22814017	22816053	GST

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