Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00505 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTAGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGCACTAATATTCAGACAAACGAAGAGGTTGCAATAAAGCTCGAAAATGTCAAGACAAAGCATCCCCAATTGCTGTATGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCTAATGTCAGATGGTTTGGAGTGGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGCAGTAGAAAACTATCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCAAAATCATTTCTGCATCGGGATATCAAACCGGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACCGAGATAGTTCAACACATCAACACATACCTTACAGGGAAAATAAAAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTCGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGTCTTAAAGCGGGAACAAAGAAACAGAAGTACGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCTTACTTCCATTACTGCCGATCATTGAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTCCGTGACTTGTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGACTGGACCATTTTGAAGTATCAGCAATCACAGCTAGCCACTCCTCCAACACGGGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCGGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTTTGGTTTCAGTGGATTCCTCGAGGCGGAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCTAGGCGGGCTGCTGTTTCTAGTAGCCGTGATGCATTTGTTGGTGCTGAGTCAGATATTCGGACTCGCACTGCTGAGGCTAGCCCTGGAGCAGCACATCGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCTAAGAGAGTTGTATCATCCGGGAGAAATGCTTCTCATGTGAAAAATTATGACACTGCGCTTAGGGGCATGGAAGGTTTGCAATTAGAGAATGATGAGAGGACCCATTATTAA 1365 0.4337 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPALVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRAAVSSSRDAFVGAESDIRTRTAEASPGAAHRGLSGQRSSPIGSSDPKRVVSSGRNASHVKNYDTALRGMEGLQLENDERTHY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00505 454 MobiDBLite consensus disorder prediction 362 376 - -
Gma17g00505 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00505 454 MobiDBLite consensus disorder prediction 408 431 - -
Gma17g00505 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gma17g00505 454 MobiDBLite consensus disorder prediction 362 436 - -
Gma17g00505 454 MobiDBLite consensus disorder prediction 303 346 - -
Gma17g00505 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gma17g00505 454 PANTHER CASEIN KINASE I-LIKE 356 437 - -
Gma17g00505 454 PANTHER CASEIN KINASE I-LIKE 1 312 - -
Gma17g00505 454 PANTHER CASEIN KINASE-RELATED 356 437 - -
Gma17g00505 454 PANTHER CASEIN KINASE-RELATED 1 312 - -
Gma17g00505 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gma17g00505 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00505 454 MobiDBLite consensus disorder prediction 303 322 - -
Gma17g00505 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00505 454 CDD STKc_CK1_delta_epsilon 8 282 - -
Gma17g00505 454 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00505 Gma-Chr17 4151853 4157886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00505 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.19e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gma17g00505 Pkinase 9.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00505 K02218 - gmx:100811567 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00505 17 4151853 4157886 Gma17g00505 17 4151853 4157886 ECH
Gma17g00505 17 4151853 4157886 Gma13g00859 13 22827070 22833265 GST
Gma17g00505 17 4151853 4157886 Gma15g01603 15 15816175 15824258 PCT
Gma17g00505 17 4151853 4157886 Gma09g00591 09 6499454 6505351 PCT
Gma15g01603 15 15816175 15824258 Gma17g00505 17 4151853 4157886 PCT
Gma09g00591 09 6499454 6505351 Gma17g00505 17 4151853 4157886 PCT