Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00502 ATGTGCGGTGACGCCACGAACTGGGACGAAGACGCATACAGAGAAACCATTCTCAAGGAGAGGGAAATCCAAACCCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTACACCTCTAACCTCGACACTCTCATCCTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCATCGCCGCCTCTAAGATAAAAAATCCATTCGGTTTCGTCAATGCCGATACAGATGAGTTGTTGGCTGAACCAAATTGCTTCGTTCAAGCGCACGATGGACCTGCTTACGATGTCAGATTTTATGGTGATGGCGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAACGAATTTTCAAGCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCCCAACACAAaggtccttggggtgcgctttcacctatccctgagaataatgctattgctgtcaatactcaggggggatctgtttttgctgcatctggcgattcttgtgcatattgttgggatgtggaaactggtaaagtgaaaatggtattcaaggggcacatggactatttgcattgtatagttgctcgcaactcattagatcagATCATAACAGGTTCGGAGGATGGGACGACTCGAATTTGGGATTGCAAAAGTGGAAAGTGTACGCAAGTGATTGATCCAGCAAGAGATTTGAAATTAAAGGGATCTGCTTCTTGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCATATCAAAGATTCCTACCCGTGCTTGTGTACAAGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAACGGCACTATCCTTTCACAAATACAGTGTGCTCCTTCGTCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGCGAAACGCTCTTCGTTATCTTTTTCTCGACTCCGCGGCGTAGATCCGAGGAGTTCGGGAAACCCTAACTCATCTTCCTTCACAACAGAACAACGCTTCTTTTCCCTATCCATCATCTCAACTGAAGTCATGGCTGGACTAGCACCTGAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTACGCATACGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAATCTGGAACTGGGAAGACGGCCACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACTCAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGGGCACTTGGAGATTATCAAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAGGACCAGCGCATTCTATCTAGTGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCCGACAGTCACTTCAGCCAGACCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGATCAGATCTACGATATATTTCAGCTGCTTCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCCACAATGCCTCCTGaggcccttgagatcaccaggaagtttatgaacaaacctgtgaggatccttgtgaagcgtgatgagctcaccttggaggGTATTAAGCAATTTTATGTCAATGTTGAAAAGGAGGAATGGAAGCTGGACACACTCTGCGATCTTTATGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTTAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGTGACCACACAGTCTCAGCAACCCACGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTTTGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGGAGGTTCGGAAGGAAGGGTGTTGCGATCAACTTTGTCACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA 2421 0.4073 MCGDATNWDEDAYRETILKEREIQTRTVFRTAWAPPYTSNLDTLILASSDGSVASYSISSSIAASKIKNPFGFVNADTDELLAEPNCFVQAHDGPAYDVRFYGDGEDALLLSCGDDGRIRGWRWNEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSLDQIITGSEDGTTRIWDCKSGKCTQVIDPARDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECISKIPTRACVQDMLFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGAKRSSLSFSRLRGVDPRSSGNPNSSSFTTEQRFFSLSIISTEVMAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00502 806 Pfam WD domain, G-beta repeat 197 232 IPR001680 GO:0005515
Gma17g00502 806 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Gma17g00502 806 Gene3D - 423 641 IPR027417 -
Gma17g00502 806 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 433 461 IPR014014 GO:0003724
Gma17g00502 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Gma17g00502 806 SMART WD40_4 155 190 IPR001680 GO:0005515
Gma17g00502 806 SMART WD40_4 243 281 IPR001680 GO:0005515
Gma17g00502 806 SMART WD40_4 82 123 IPR001680 GO:0005515
Gma17g00502 806 SMART WD40_4 193 232 IPR001680 GO:0005515
Gma17g00502 806 SMART WD40_4 284 320 IPR001680 GO:0005515
Gma17g00502 806 CDD DEADc_EIF4A 437 635 - -
Gma17g00502 806 Pfam Helicase conserved C-terminal domain 659 767 IPR001650 -
Gma17g00502 806 Gene3D - 135 395 IPR015943 GO:0005515
Gma17g00502 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 787 IPR027417 -
Gma17g00502 806 Gene3D - 642 806 IPR027417 -
Gma17g00502 806 PANTHER RNA HELICASE 416 806 - -
Gma17g00502 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Gma17g00502 806 SMART helicmild6 686 767 IPR001650 -
Gma17g00502 806 Gene3D - 7 134 IPR015943 GO:0005515
Gma17g00502 806 Pfam DEAD/DEAH box helicase 458 619 IPR011545 GO:0003676|GO:0005524
Gma17g00502 806 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 416 806 - -
Gma17g00502 806 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 580 588 IPR000629 -
Gma17g00502 806 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 645 806 IPR001650 -
Gma17g00502 806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 464 634 IPR014001 -
Gma17g00502 806 SMART ultradead3 452 649 IPR014001 -
Gma17g00502 806 CDD SF2_C_DEAD 646 776 - -
Gma17g00502 806 SUPERFAMILY WD40 repeat-like 33 362 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00502 Gma-Chr17 4124059 4134743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00502 394 806 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00502 K03257 - qsu:112002178 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00502 17 4124059 4134743 Gma17g00502 17 4124059 4134743 ECH
Gma17g00502 17 4124059 4134743 Gma13g00862 13 22851572 22853809 GST
Gma17g00502 17 4124059 4134743 Gma15g01606 15 15849122 15851605 PCT
Gma17g00502 17 4124059 4134743 Gma09g00593 09 6538416 6542381 PCT
Gma15g01606 15 15849122 15851605 Gma17g00502 17 4124059 4134743 PCT
Gma09g00593 09 6538416 6542381 Gma17g00502 17 4124059 4134743 PCT