Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00496 ATGGAGGAAATATCTTCTAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAGGAGTCCGCGGTGACGACTCACATGGAGATAACTGGGCTGAAGCTCATGGCAAATACAGCAGCGGCTGCTTTAATGTTAAATCCTGCAGTGGAGTGTTTAAAGGAGAATCAAGTTGGAGCTGCTGCTCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTCTTGAATGAAAGCCATAACCAGGCAATAAAGGAAGATGAATTGATGTTAGCAGTGGATTTTCAGTCTCTGCATAGTTCAAGCTCTCAATCTGTGGCTAATGGCAAAAGTGATCCTTGTAGGGAGGAAGCTGCAGCATTGAAGAGTAGTTTTTCTGAAATAGATTCACCAATCATGATCAAGGTTGATGATGATGTTGATGGTAAGTCCGGAATAAGCGAGCTGTGTCCATCAATGAAGCCGCCAGTGGAGGAAACAGTTTCTGTTGCTATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGAGTCTGATCCTAAACCATCTGCTGTGCTTCTTGATCAGTTGCCAGGGGAGAGTAAAACATGGAGAACAGGCAACCCAAATGCTTTGGAATTGAATAGTGGACCTCTCTGGGGTTGTTCATCAATTTGTGGAATGAGGCAGGAGATGGAAGATGCTATTTCTGTTAAGCCTCGACTTTTTCAAGTTTCTTCACAGATGCTAGTGAATGACCATGTGAATGAGAACGAAAAACAGTCACTAGCCCACTTTTTTGCTGTCTATGATGGACATGGGGGCCTTCAGGTTGCCAATTACTGCCAGGAACGTCTTCATTCAAAATTGATTGAGGAGATAGAGACTGCACAATCAACTTCGGCTGAAACAAATGGGAGAGGTGATTGGCAGGACCAATGGAAGAAAGCATTTATCAATTGTTTTCAGAAAATGGATGATGATGTGGGAGGAATTGGTGCAAGTAACAGGGGAAACAACAGTGGTGGGTCTGAGTCTAATATTAAAACTGTTGCTCCTGAGACTGCTGGCTCCACTGCAGTGGTTGCCATTTTAAGCCAAACCCACATCATAGTTGCAAACTGTGGAGATTCAAGAACTGTCTTATACCGTGGAAAAGAAGCCATGCCATTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGTGGGCTAGGATAGAAGCTGCGGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTGAAACCATGGGTAATTCCAGAACCCGAAGTCAATATTGTGCGTCGAGAGAAAAACGATGAGTGTCTCATTCTAGCAAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCATGTGAGGTTGCAAATAAGCGAATCCTTCTTTGGCACAAGAAGTTTGGTGACAATGGCCCAACAGGACGCAGTGAAGGAGCTGATCCTGCAGCTCAGTCCGCCGCAGAGTATCTAACTAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTGATAGACTTAAAGGCTCAAAGAAAAATTAAGAGAAAGCCATAA 1617 0.4335 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECLKENQVGAAALVSEMVIECESNWVLNESHNQAIKEDELMLAVDFQSLHSSSSQSVANGKSDPCREEAAALKSSFSEIDSPIMIKVDDDVDGKSGISELCPSMKPPVEETVSVAMDITSEDQSGSDESDPKPSAVLLDQLPGESKTWRTGNPNALELNSGPLWGCSSICGMRQEMEDAISVKPRLFQVSSQMLVNDHVNENEKQSLAHFFAVYDGHGGLQVANYCQERLHSKLIEEIETAQSTSAETNGRGDWQDQWKKAFINCFQKMDDDVGGIGASNRGNNSGGSESNIKTVAPETAGSTAVVAILSQTHIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDEWARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWVIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVANKRILLWHKKFGDNGPTGRSEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRKIKRKP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00496 538 CDD PP2Cc 217 528 IPR001932 -
Gma17g00496 538 PANTHER ALPHABET, ISOFORM E-RELATED 84 538 - -
Gma17g00496 538 Gene3D - 205 538 IPR036457 -
Gma17g00496 538 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 84 538 - -
Gma17g00496 538 ProSiteProfiles PPM-type phosphatase domain profile. 215 528 IPR001932 -
Gma17g00496 538 SMART PP2C_4 205 526 IPR001932 -
Gma17g00496 538 ProSitePatterns PPM-type phosphatase domain signature. 262 270 IPR000222 GO:0043169
Gma17g00496 538 SUPERFAMILY PP2C-like 213 529 IPR036457 -
Gma17g00496 538 Pfam Protein phosphatase 2C 238 521 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00496 Gma-Chr17 4060218 4063782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00496 1 537 PP2C-type Phosphatase Gene Family AT1G17550 44.118 3.01e-135 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00496 K14497 - gmx:100802159 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00496 17 4060218 4063782 Gma17g00496 17 4060218 4063782 ECH
Gma17g00496 17 4060218 4063782 Gma13g00870 13 22916183 22918512 GST
Gma17g00496 17 4060218 4063782 Gma15g01614 15 15978733 15981338 PCT
Gma17g00496 17 4060218 4063782 Gma09g00603 09 6675535 6678141 PCT
Gma15g01614 15 15978733 15981338 Gma17g00496 17 4060218 4063782 PCT
Gma09g00603 09 6675535 6678141 Gma17g00496 17 4060218 4063782 PCT