Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00486 ATGGACGGTGGTGGAGTGAACTACAACCCTCGCACCGTGGAACAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCTGGCATGATCAAGGCTCTCACCACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGATTCCCTAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGACAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGCGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAATGCTGACAGGAAACGCCTGTTCTCTATGATTAATGATTTACCAACAATATTTGAGATTGTGACTGGAAGCGCAAAAAAACAGACGAAGGAAAAATCATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTGGGGCATGTGGGGAGCACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCCAGGGCCGAACACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA 759 0.4717 MDGGGVNYNPRTVEQVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDNADRKRLFSMINDLPTIFEIVTGSAKKQTKEKSSISNHSSNKSKSGSKGRGSESGKYSKETKDEEEEVLDEEDDEEHEETLCGACGEHYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00486 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Gma17g00486 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Gma17g00486 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Gma17g00486 252 CDD PHD_AL_plant 198 248 IPR044104 -
Gma17g00486 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 252 - -
Gma17g00486 252 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Gma17g00486 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Gma17g00486 252 Pfam PHD-finger 199 248 IPR019787 -
Gma17g00486 252 PANTHER CPG BINDING PROTEIN 5 252 IPR045104 GO:0006355|GO:0042393
Gma17g00486 252 MobiDBLite consensus disorder prediction 146 192 - -
Gma17g00486 252 MobiDBLite consensus disorder prediction 146 169 - -
Gma17g00486 252 SMART PHD_3 198 246 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00486 Gma-Chr17 3998308 4002516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00486 1 251 Alfin-like Transcription Factor Family AT3G42790 72.908 3.32e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gma17g00486 Alfin 4.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00486 - - gmx:100170695 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00486 17 3998308 4002516 Gma07g00336 07 2972997 2982686 ECH
Gma17g00486 17 3998308 4002516 Gma15g00260 15 2250244 2255179 ECH
Gma17g00486 17 3998308 4002516 Gma14g00902 14 10143792 10149051 ECH
Gma17g00486 17 3998308 4002516 Gma17g02149 17 38998822 39003831 ECH
Gma17g00486 17 3998308 4002516 Gma17g00486 17 3998308 4002516 ECH