Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00484 ATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGA 642 0.4533 MKPFLSNHTDSMYNCSQVGCSHPMAHTSYPCGDPYFGSSIVAYGPQAINQQMVPQMLGLASTRIALPVDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLPQSNAELVTDAYQKKDASEAENHPSSTGENASITFTAISALTSMSSNSVNFPNMAGSSQCSGGLTFGAGALQCTSVGR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00484 213 Gene3D - 72 134 - -
Gma17g00484 213 ProSiteProfiles NF-YA/HAP2 family profile. 72 132 IPR001289 GO:0003700|GO:0006355
Gma17g00484 213 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 75 129 IPR001289 GO:0003700|GO:0006355
Gma17g00484 213 SMART cbf3 71 132 IPR001289 GO:0003700|GO:0006355
Gma17g00484 213 PRINTS CCAAT-binding transcription factor subunit B signature 75 97 IPR001289 GO:0003700|GO:0006355
Gma17g00484 213 PRINTS CCAAT-binding transcription factor subunit B signature 106 129 IPR001289 GO:0003700|GO:0006355
Gma17g00484 213 ProSitePatterns NF-YA/HAP2 subunit signature. 77 97 IPR018362 GO:0003677|GO:0016602
Gma17g00484 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 210 - -
Gma17g00484 213 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 210 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00484 Gma-Chr17 3984346 3989094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00484 25 138 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.870 1.74e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma17g00484 CBFB_NFYA 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00484 K08064 - gmx:100777544 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00484 17 3984346 3989094 Gma17g00484 17 3984346 3989094 ECH
Gma17g00484 17 3984346 3989094 Gma13g00881 13 23027566 23032781 GST