Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00482 ATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAATCGGATCCGGACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGAGTTCGGAGCAACGCCACCGAGTTGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGCTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGAACGCCGAACTCCGCCAGCGGACGGAGGGCGGAGCCGGTGGTGCTGTTCGTTGAAGAGAACGAGCCGAAGGAGTGGGTTGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGTATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAACAGTGAGCGGTTACCTCGTAATATGTACCGTCCAACAGGGATGGGAATGGGTTACTCATCCTCAGATTCCTTTGATCATCAGTCTATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCAAAAGTGTCCACCATTAGTGCGGCCAAGACAGAGATATCATCAATGGAGGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCGGGTGATTTTTCAATCAGTAATGCTAGTGAATTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAGTTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1101 0.5186 MLTCIARPKKPDESDPDNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPATQGRVRSNATELDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPLRSEDESSKLESVEESPVTPPLNSERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMEASIRSSSSREADRSGDFSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00482 366 MobiDBLite consensus disorder prediction 199 230 - -
Gma17g00482 366 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Gma17g00482 366 ProSiteProfiles BRX domain profile. 132 187 IPR013591 -
Gma17g00482 366 ProSiteProfiles BRX domain profile. 311 366 IPR013591 -
Gma17g00482 366 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 366 IPR044532 -
Gma17g00482 366 MobiDBLite consensus disorder prediction 1 27 - -
Gma17g00482 366 Pfam Transcription factor regulating root and shoot growth via Pin3 132 186 IPR013591 -
Gma17g00482 366 Pfam Transcription factor regulating root and shoot growth via Pin3 310 365 IPR013591 -
Gma17g00482 366 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00482 Gma-Chr17 3964213 3969029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00482 1 366 Major Intrinsic Protein MIP AT1G31880 44.588 3.10e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00482 - - gmx:100777018 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00482 17 3964213 3969029 Gma17g00482 17 3964213 3969029 ECH
Gma17g00482 17 3964213 3969029 Gma13g00884 13 23053397 23058763 GST
Gma17g00482 17 3964213 3969029 Gma15g01624 15 16118282 16126070 PCT
Gma15g01624 15 16118282 16126070 Gma17g00482 17 3964213 3969029 PCT