Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00473 ATGATGAATGGAAGGAACGTTGACACAAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATTTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTCTTGCCTCAACACTTTGGGTGGAATTATTTGCCAATGGGATTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAATGACAGCAGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGTACTCTTCCCAACCACTCATTCTCTGTCTCATGACACTTACCATCATCATCACCATCATCACTCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATTCTTCGAGGCCCTCTTCCGGTGGTGTTTCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCATGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTAAAAGAGGAGGTGGATGAGCATGCCTTTTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAGCAATGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAGCATCCACAGCAAGATCAAGGTTGCTACATATCAGGCAGTGATATCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCTCCCAAAAGCAGAGGATCATGGCTTGATTTGGATGATAAATCATCCACAACCCAGCTTTCAATTTCCATTCCCACTTCTACTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1134 0.4515 MMNGRNVDTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPMTAATNTDASTPTTILSITKNSPVLFPTTHSLSHDTYHHHHHHHSHPQQHSSHSFLYHSSRPSSGGVSLSFQDNSAPLFLDTASCSQNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDSNEYSYLQLQSLSGNNSKHPQQDQGCYISGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFSSTTQRDG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00473 377 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma17g00473 377 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma17g00473 377 MobiDBLite consensus disorder prediction 155 184 - -
Gma17g00473 377 MobiDBLite consensus disorder prediction 160 174 - -
Gma17g00473 377 PANTHER GROWTH-REGULATING FACTOR 5 3 353 - -
Gma17g00473 377 Pfam WRC 77 119 IPR014977 -
Gma17g00473 377 PANTHER - 3 353 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma17g00473 377 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma17g00473 377 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00473 Gma-Chr17 3893586 3895572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00473 4 119 GRF Transcription Factor Family AT3G13960 67.500 7.99e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma17g00473 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00473 - - gmx:100807835 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00473 17 3893586 3895572 Gma17g00473 17 3893586 3895572 ECH
Gma17g00473 17 3893586 3895572 Gma13g00896 13 23134795 23136685 GST
Gma17g00473 17 3893586 3895572 Gma15g01646 15 16998359 17000758 PCT
Gma17g00473 17 3893586 3895572 Gma09g00629 09 7094053 7096039 PCT
Gma15g01646 15 16998359 17000758 Gma17g00473 17 3893586 3895572 PCT
Gma09g00629 09 7094053 7096039 Gma17g00473 17 3893586 3895572 PCT