Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00460 ATGGGATCAAGCTTCTCTAGTTGTTATGAGGGTGAATCTGTGTCTCCTTCTCCAAAGCCAACCAAAGTGGTGGCTACGAAGGGTGGTTCTTCTTCCAACAGGGTCTCTATAACGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTCTCCGTTTCTCTAGTGGGGTCTAACCTGCATGTGTTTTCACTCGCTGAGCTCAAGATCATAACGCAGGGTTTCTCTTCGAGTAACTTTCTCGGAGAAGGAGGTTTCGGACCCGTGCATAAGGGCTTCATTGATGACAAGCTTAGGCCTGGTCTCGAGGCTCAACCGGTTGCCGTCAAGCTTTTGGACTTGGACGGTTCTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACATCTCGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAGTATTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATATACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGGATTATAATGCAAAACTTTCCGATTTTGGCTTGGCCAAAGATGGTCCTGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTCGTGCTCTTGGAGCTTCTAACAGGACGAAGGTCAGTGGACAAAGGGCGCCCACAAAGAGAACAGAACCTCGTGGAATGGGCCAGGTCTGCTTTGAATGATTCCCGGAAACTTAGCAGAATAATGGATCCAAGGCTTGAGGGTCAGTATTCTGAGGTTGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGCCTTAGCCACAGGCCAAGGAGTAGACCCTTGATGAGCACTGTGGTTAATGTTCTCGAGCCACTTCAGGACTTTGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCAGCTGAACAACAACAATACAATGAAGTCGCAAAAGAGAGTGAAACACCTAAGGAGAGGAAGAGGGAAAATGGTCATCATCATAACCGACGTCATCATCATCATCGCCACAATGGTCATAGGCATCATCCACTTAAATCTCCTAAGACACCAATGCCATCAGATCAGTCACAGAATGATGAACACCGAAATGGTAGAAAAAGTGGGTCTAATTCACCTGATACATTCAATGCATCAGAAGCTCAACGAAGCATGGGTTAG 1371 0.4595 MGSSFSSCYEGESVSPSPKPTKVVATKGGSSSNRVSITDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQGFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPQREQNLVEWARSALNDSRKLSRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVNVLEPLQDFDDVPIGPFVYTVPAEQQQYNEVAKESETPKERKRENGHHHNRRHHHHRHNGHRHHPLKSPKTPMPSDQSQNDEHRNGRKSGSNSPDTFNASEAQRSMG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00460 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gma17g00460 456 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 21 409 - -
Gma17g00460 456 MobiDBLite consensus disorder prediction 374 456 - -
Gma17g00460 456 PANTHER OS01G0588500 PROTEIN-RELATED 21 409 - -
Gma17g00460 456 MobiDBLite consensus disorder prediction 439 456 - -
Gma17g00460 456 Gene3D Transferase(Phosphotransferase) domain 1 158 361 - -
Gma17g00460 456 SUPERFAMILY Protein kinase-like (PK-like) 50 353 IPR011009 -
Gma17g00460 456 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672|GO:0006468
Gma17g00460 456 MobiDBLite consensus disorder prediction 1 31 - -
Gma17g00460 456 Gene3D Phosphorylase Kinase; domain 1 44 157 - -
Gma17g00460 456 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00460 456 CDD STKc_IRAK 81 355 - -
Gma17g00460 456 MobiDBLite consensus disorder prediction 393 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00460 Gma-Chr17 3792470 3795039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00460 61 392 Glycoside Hydrolase AT3G07070 50.448 2.25e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma17g00460 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00460 - - gmx:100305397 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00460 17 3792470 3795039 Gma17g00460 17 3792470 3795039 ECH
Gma17g00460 17 3792470 3795039 Gma13g00908 13 23232630 23235097 GST
Gma17g00460 17 3792470 3795039 Gma15g01660 15 17195070 17198705 PCT
Gma17g00460 17 3792470 3795039 Gma09g00640 09 7260471 7264012 PCT
Gma15g01660 15 17195070 17198705 Gma17g00460 17 3792470 3795039 PCT
Gma09g00640 09 7260471 7264012 Gma17g00460 17 3792470 3795039 PCT