Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00449 ATGTCCAGCTCATCGGAATATTCGGCATTTTCCGGCCCCCGCCCGGCCAAGTCGCCGGCCGAGAAGTCCACTTTCTCTCAGACTTGTAGTCTATTGAGCCAATACATCAAGGAAAAAGGTGCCTTCGGAGACCTTACCCTCGGGATGACTCGCACCCCCGATACTTACGGTTCCCCTGAGACATCGTGTCACTCTGCAACAACCATGGAGTTGTTTCCCACCATCATCAAGCAACGGAACCCAACTACTGTGGATTTCCTATCTCCCCAGAGTGCTTATCCTCACCACTCAGAGGTTCCAACCATGGTCAAATCAAGTGCATTTAAGTCTATAGAGAAGGAGCCTAAAGCTGCTCAGTTGACAATCTTTTATGCTGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGAAAAATTGGAGGAGATAATGTCATTAGCCGGCAAGGGAATATCCCAAAGCCAAAACACCTCTGCATGTGCTCACACTCATAACCAGCAAGGGAATCATCCTTCCTTTGTTCCTAATGTCTCCCCTCAAGCACCGTCCAGACCAATTGTTTGTGAACTGCCAATTGCTAGGAAAGTTTCACTTCATCGGTTCCTTTCTAAGAGAAAAGATAGAATTGCTTCCAAAGCACCATATCAAATAAACAATCCCAACTCTGCTTCAAATAAGCCGGCTGAATCCATGACATGGCTAGGATTAGGTGCTCAATCAACACAATTCTGA 729 0.465 MSSSSEYSAFSGPRPAKSPAEKSTFSQTCSLLSQYIKEKGAFGDLTLGMTRTPDTYGSPETSCHSATTMELFPTIIKQRNPTTVDFLSPQSAYPHHSEVPTMVKSSAFKSIEKEPKAAQLTIFYAGQVVVFDDFPAEKLEEIMSLAGKGISQSQNTSACAHTHNQQGNHPSFVPNVSPQAPSRPIVCELPIARKVSLHRFLSKRKDRIASKAPYQINNPNSASNKPAESMTWLGLGAQSTQF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00449 242 SMART tify_2 113 148 IPR010399 -
Gma17g00449 242 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
Gma17g00449 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 236 IPR040390 -
Gma17g00449 242 Pfam Jas motif 190 215 IPR018467 -
Gma17g00449 242 Pfam tify domain 114 147 IPR010399 -
Gma17g00449 242 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g00449 242 PANTHER PROTEIN TIFY 10A 20 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00449 Gma-Chr17 3686977 3689307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00449 1 238 Tify Gene Family AT1G19180 42.412 5.03e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma17g00449 tify 6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00449 K13464 - gmx:100527510 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00449 17 3686977 3689307 Gma17g00449 17 3686977 3689307 ECH
Gma17g00449 17 3686977 3689307 Gma13g00920 13 23351542 23354904 GST
Gma17g00449 17 3686977 3689307 Gma15g01679 15 17561429 17564101 PCT
Gma17g00449 17 3686977 3689307 Gma09g00654 09 7507755 7510317 PCT
Gma15g01679 15 17561429 17564101 Gma17g00449 17 3686977 3689307 PCT
Gma09g00654 09 7507755 7510317 Gma17g00449 17 3686977 3689307 PCT