Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00448 ATGCAGCCTCAGAGGTTAAGGCAGCAAGCCATGATGCAACCATCTCTCTACCACCACCCTGCTCTACTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTAGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGTCATCCTATGGGTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCCACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGACTTCAGATTCGAGAAGTGTCGTGGAGTTGACCAATGGATCATCTGAAGATGGCCAAGAAACAACCAATGATGACaCTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTATTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGGACTGCCTCAACTCCTCTCCCACCACCTACTTCTGCGAATGTGTCGGGATTTTCTCTTGCTAGTCTTGCAGCTTATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACATGCCCTTATGCATCAACAAGGTCAACATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCTGGGGCTGGTTATGATGCAAGATTCCAGAATGTTGCGACCACCCAACACCTAATGTACTATCAGTAA 1236 0.4547 MQPQRLRQQAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQTSDSRSVVELTNGSSEDGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLNAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSANVSGFSLASLAAYERQMALSKMGGAHALMHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00448 411 SMART rrm1_1 47 116 IPR000504 GO:0003723
Gma17g00448 411 SMART rrm1_1 253 322 IPR000504 GO:0003723
Gma17g00448 411 SMART rrm1_1 132 205 IPR000504 GO:0003723
Gma17g00448 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Gma17g00448 411 SUPERFAMILY RNA-binding domain, RBD 45 208 IPR035979 GO:0003676
Gma17g00448 411 Gene3D - 1 128 IPR012677 -
Gma17g00448 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 407 - -
Gma17g00448 411 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 407 - -
Gma17g00448 411 CDD RRM1_TIA1_like 48 118 - -
Gma17g00448 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Gma17g00448 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Gma17g00448 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Gma17g00448 411 Gene3D - 129 229 IPR012677 -
Gma17g00448 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Gma17g00448 411 MobiDBLite consensus disorder prediction 209 251 - -
Gma17g00448 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Gma17g00448 411 Gene3D - 230 330 IPR012677 -
Gma17g00448 411 SUPERFAMILY RNA-binding domain, RBD 243 331 IPR035979 GO:0003676
Gma17g00448 411 CDD RRM3_TIA1_like 252 326 - -
Gma17g00448 411 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00448 Gma-Chr17 3675641 3680970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00448 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 31.271 5.49e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00448 K13201 - gmx:100813736 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00448 17 3675641 3680970 Gma17g00448 17 3675641 3680970 ECH
Gma17g00448 17 3675641 3680970 Gma13g00921 13 23357994 23361870 GST