Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00444 ATGGCAACCTCTCAAATCACTGCATCATTGAGGAACTTGCCTGCATTTGAAAGGTTTCAACCTTCAGCGCTTCGATTTTCTTCTGCTGGGCACGTCAGAATTGGAACACTCACGCAACCCTCGTTTCCCTCTTTCGTTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGcacaccactgttaagcctctgggtgatagagtactggtgaaaattaaggatgcagaggagaagactgcaggtgggattttactgccagcaaatgctcaaggcaagcctcaagggggtgaagtggttgctgttggagaagGGAAGTCGGTTGGGAAGTGCAAAGTGGATGTTAGTGTGAAGacaggtgcacaagttgtgcattcaaagtatgcagggactgaggtagagttcaatggttcaaaacatcttattctgaaggacgatgacattgttggtatccttgaaactgatgaGGTCAAGGATCTTAAACCCTTGAACGATAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGAGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCTATTGGAACAGTGATAGCAGTTGGTCCGGGGCCTCTGGAtgaggaaggtaacagaaagccattgtccgtcatgcctgggaatacagttctgtactccagatatgcagggaatgaCTTCAAGGGCAAAGATGGTTCTGACTACATTGCCTTGAGGGCCTCAGATGTCATGGCTATCCTGTCCTAG 756 0.2765 MATSQITASLRNLPAFERFQPSALRFSSAGHVRIGTLTQPSFPSFVVKAATVVAPKHTTVKPLGDRVLVKIKDAEEKTAGGILLPANAQGKPQGGEVVAVGEGKSVGKCKVDVSVKTGAQVVHSKYAGTEVEFNGSKHLILKDDDIVGILETDEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVMPGNTVLYSRYAGNDFKGKDGSDYIALRASDVMAILS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00444 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Gma17g00444 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Gma17g00444 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Gma17g00444 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Gma17g00444 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Gma17g00444 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Gma17g00444 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma17g00444 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Gma17g00444 251 PANTHER GROES CHAPERONIN 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00444 Gma-Chr17 3630853 3632978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00444 1 251 Calmodulin-binding Proteins AT5G20720 72.266 8.24e-130 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00444 K04078 - gmx:100804915 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00444 17 3630853 3632978 Gma17g00444 17 3630853 3632978 ECH
Gma17g00444 17 3630853 3632978 Gma13g00925 13 23394197 23396495 GST
Gma17g00444 17 3630853 3632978 Gma15g01688 15 17718545 17722311 PCT
Gma17g00444 17 3630853 3632978 Gma09g00659 09 7606334 7609849 PCT
Gma15g01688 15 17718545 17722311 Gma17g00444 17 3630853 3632978 PCT
Gma09g00659 09 7606334 7609849 Gma17g00444 17 3630853 3632978 PCT