Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00443 ATGAAGGCTCCATCCAACGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACTATGAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGGCTGACTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAGACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATCGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCGCGTAGAGCAGCTGAGAAAATATTACCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGgacaaccaaagaggcatctattgactactggatggagtgtatttgtcagCACTAAAAGACTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCATCTTCTTTTAGGTATAAGACGTGCTAATAGACAGCAACCAGCACTCTCTTCGTCGGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAATAGCCCATTCACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCGTTAGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGAGTGCGTGGGTATATGGGGACAATCACTGGTATCAGTGACTTGGATCCTGTCCGTTGGAAAAGCTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCCAGAAGAGTTTCAATCTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTCAGGCCAAAGTTCCCCCGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAGAGAGCTGTGCCTTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTCAGTTTAATGCAGTGGATGAGCATGCAGCAGAATAACCAGCTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTTCATCTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACcagttgcaacagtccccagtgtcatggcctcagcagcaacagttgcagcagcagcagcagcagcagcaacaacaacaacaacagcaacaacagcagcaacaacaacaacagcaacaacagcagcagctgcagtcattgttgcaaataccaatgaaccagctccagcagcagaggcaacagcagctgcctgaaccacaaaatctgccattgttgcagcaactgcctcagcatctaggacagcaacctcagaaacaacaacagtcaagtcaacatgctactattatgaataatggggtagttgcctctaaccaaattacaaatcagtttgcacaacaaccaatggcatatggtcagcttcagcaacaacagttactttcaggaggtatccaaccccagcaaGGTATCCAGTCAGCCACTAAGAATACATTCCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGCCTCTTACAGAGACAGCAGCAGCAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAGCAAAACCTGCCACAGAGAGCACTACAACAACCGCCAGCCACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAATTGCTACAGAAATTGCAGCAGCAGCAGCAACAACAACTTCTTTCCACGTCCACCCCACTTTTGCAGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAGCAATCACTGCAGCCCCTGCTGCCTATATCTCAGCATCAGCCTCAACAACTTGGCAATAATGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCATCTCTTACGCAATCGCAACAGCTTTCAATGAACCAGCCCCAGAATACACAGAAATCACATACCATCACTAGAGCCCCCTCTACACTAACTGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAACAACTGCCAGGTGTCTCCTCCGAACCTCCTGAAAAGAAATCAGCAAATACCAGCCACATTAGGGGGGGGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGACACACAGATCAAACAGGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATTACTGATCCGCTGGAAGCTTCTTCTTCCGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAAGGGATGTCCAATCACACCCAAGAAACAGTTTGCCATTTGACTCTAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAAGGGGGTATGACTCCCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGCTAGTGCTCCAAGGGACATTGAAACTGAGCTGTCAACCGCTGATATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCAGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTTTTAAATAATAATAATGGTTTGCGGACCAACCAAACTCCACGAATGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGACGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGATTGGAAATTAGTATACGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTCAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCCTTTAATAGGTAA 3411 0.3884 MKAPSNGYLPNSGEGERKTMNSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKILPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRGYMGTITGISDLDPVRWKSSQWRNIQVGWDESTAGERPRRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAVPWLGDDFGMKDASSSIFPGFSLMQWMSMQQNNQLSAAQSGCFPSMLSSNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLLQQLPQHLGQQPQKQQQSSQHATIMNNGVVASNQITNQFAQQPMAYGQLQQQQLLSGGIQPQQGIQSATKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRALQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQQQLLSTSTPLLQSQLLQQQNTHQQNQQSLQPLLPISQHQPQQLGNNAFSTEKLLNSNNFSSSLTQSQQLSMNQPQNTQKSHTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQIPATLGGGLIVEPTSNLIQELHSKPDTQIKQELLNVKGPDQLKYKGTITDPLEASSSGTSYCLDPGNVQQNLPLSNFCMERDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSQKDLQNLLSNYASAPRDIETELSTADISSQSFGVPNMPFKPGCSSDVGINDTGVLNNNNGLRTNQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNR 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00443 1136 MobiDBLite consensus disorder prediction 1113 1136 - -
Gma17g00443 1136 CDD B3_DNA 125 226 IPR003340 GO:0003677
Gma17g00443 1136 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma17g00443 1136 PANTHER AUXIN RESPONSE FACTOR 19 1 1124 - -
Gma17g00443 1136 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gma17g00443 1136 Gene3D - 289 360 - -
Gma17g00443 1136 Pfam AUX/IAA family 1005 1094 IPR033389 -
Gma17g00443 1136 SMART B3_2 126 228 IPR003340 GO:0003677
Gma17g00443 1136 ProSiteProfiles PB1 domain profile. 1008 1101 IPR000270 GO:0005515
Gma17g00443 1136 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gma17g00443 1136 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1124 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma17g00443 1136 MobiDBLite consensus disorder prediction 767 818 - -
Gma17g00443 1136 Gene3D - 1004 1097 - -
Gma17g00443 1136 Coils Coil 494 531 - -
Gma17g00443 1136 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gma17g00443 1136 SUPERFAMILY CAD & PB1 domains 1021 1086 - -
Gma17g00443 1136 Gene3D - 124 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00443 Gma-Chr17 3623651 3629621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00443 1 490 B3 DNA Binding Superfamily AT5G20730 79.559 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma17g00443 AUX_IAA 6.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00443 - K14486 gmx:100816054 1836.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00443 17 3623651 3629621 Gma17g00443 17 3623651 3629621 ECH
Gma17g00443 17 3623651 3629621 Gma13g00926 13 23397235 23403638 GST
Gma17g00443 17 3623651 3629621 Gma15g01689 15 17748841 17757950 PCT
Gma17g00443 17 3623651 3629621 Gma09g00660 09 7621370 7629225 PCT
Gma15g01689 15 17748841 17757950 Gma17g00443 17 3623651 3629621 PCT
Gma09g00660 09 7621370 7629225 Gma17g00443 17 3623651 3629621 PCT