Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00432 ATGGCCGCATTTTACGGGGTTTGGTGGAGATGCGCCCTACCAATCACAGGAAATTCAGTCACGGAGAAGAAGGAGGAGGGTATTAGTGTCTTTTCAGAGGCCTGTCCTCTGACAAGACTAGGCCACATGGGTAATGGCAGCAAACACCTCTTCTTCCTTGACGTTGGCGCTGTTAGAGTCGTGAGGGTTCGGAGGAACGGCGCGGGAGACTTCACGACGGTGACGGACGCCGTTAACAGCATTCCGTCAGGGAACAAGCGGCGAGTGGTGGTGTGGATCGGAATGGGCGAGTACCGCGAGAATGTCACCGTAGACAGGTCGAAGCCTTTCGTCACGTTTTATGGAGAAAGGAATGGGACCGACAACGACAACGACAGAGACATCATGCCCATCATAACGTACGATGCCACGGCGTTGCGGTATGGGACAGTGGACAGCGCCACCGTCGCTGTCGACGCCGACTACTTCGTGGCTGTCAATCTGGCATCCCACTGGAACAAATCTTATCAAGCAGACTCAATGCTGCTAGCTTTATACGTGCCATCTATGTCAATTTTGGACCAATGGGTTCCTATGAGCTCAACTACTTCTCACAAGATTTTACCCCCTGTTAAGGCTTTTACAAATTCTTTTGCAGGTGAATTATTGAAAGCTGGAATAATATCTAACCCCGACAACAATGAAGTGATTTGGCGGATCACAACCAACTTGTCAAGCATAGTGTCCACTCTACCTGCAAACTGTAAAGCAATAGGCTGCACGCATGGAGCTGGTTCCCATTCCCAAGGGTCCATGAACTTCGGAGACTACATCAGAGCTGCTTCTGATGAACAGATTTATGTGTTTGTGGTTGGCCAGATTGACACTCAGAGTCAGTCATACATTGATGATTTTGTGAAAGTTTCTGATTATGATCTAGTTGCGAGTCAATGCTTGAGTAGGGCTCTGCGATGCATTCTAGATAGCCCTCTTAATAAAGCTGGCATGGTAGGGGCAATATATGTTAAAATTGATCAAGGAGGAATGTTTGAAGTCAAGCCTCATGTTCAATTACCTCAAACATGCAGTCGATTCTGTGGTGTCATAATGGACTTGCTTCAAAAATCTTTGGTGCGGGCCAAACATACGAATGAAGTTCTTCTTCATGTTGTTGAGGAACCTATAACGCATCATTTGCCTGTCAACTCTTACACAGTAGTTGGGTTATACTGTCTCTCCTCTACTTCAGAAAAGTCGGTTGACATAGAGGAATATGTCTCACTTTGGAGCAATGATTTGAGTCTTGTCTTTGTGGTAGGCACAATGGTCAATGGGAAAGTAAAAGGGGACTATATGCATGATTATATTTCAGATGAAATACTATAG 1365 0.4615 MAAFYGVWWRCALPITGNSVTEKKEEGISVFSEACPLTRLGHMGNGSKHLFFLDVGAVRVVRVRRNGAGDFTTVTDAVNSIPSGNKRRVVVWIGMGEYRENVTVDRSKPFVTFYGERNGTDNDNDRDIMPIITYDATALRYGTVDSATVAVDADYFVAVNLASHWNKSYQADSMLLALYVPSMSILDQWVPMSSTTSHKILPPVKAFTNSFAGELLKAGIISNPDNNEVIWRITTNLSSIVSTLPANCKAIGCTHGAGSHSQGSMNFGDYIRAASDEQIYVFVVGQIDTQSQSYIDDFVKVSDYDLVASQCLSRALRCILDSPLNKAGMVGAIYVKIDQGGMFEVKPHVQLPQTCSRFCGVIMDLLQKSLVRAKHTNEVLLHVVEEPITHHLPVNSYTVVGLYCLSSTSEKSVDIEEYVSLWSNDLSLVFVVGTMVNGKVKGDYMHDYISDEIL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00432 454 Gene3D - 317 453 IPR029026 -
Gma17g00432 454 Gene3D - 203 316 IPR029026 -
Gma17g00432 454 SUPERFAMILY Pectin lyase-like 59 162 IPR011050 -
Gma17g00432 454 PANTHER NUCLEOLAR ESSENTIAL-RELATED-LIKE PROTEIN 214 312 - -
Gma17g00432 454 PANTHER NUCLEOLAR ESSENTIAL-RELATED-LIKE PROTEIN 313 450 - -
Gma17g00432 454 SUPERFAMILY alpha/beta knot 315 449 IPR029028 -
Gma17g00432 454 Gene3D - 45 180 IPR012334 -
Gma17g00432 454 Pfam Pectinesterase 62 163 IPR000070 GO:0030599|GO:0042545
Gma17g00432 454 Pfam EMG1/NEP1 methyltransferase 316 450 IPR005304 GO:0070037|GO:0070475
Gma17g00432 454 PANTHER NEP1/MRA1 214 312 IPR005304 GO:0070037|GO:0070475
Gma17g00432 454 PANTHER NEP1/MRA1 313 450 IPR005304 GO:0070037|GO:0070475
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00432 Gma-Chr17 3518697 3527265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00432 57 161 Carbohydrate Esterase AT5G07410 49.524 1.17e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00432 K14568 - gmx:106796761 240.736