LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g00424	ATGGCATCGTTAGAGAATGAACCTTGTCACACTCCTTCTGCCTCTGACCAATCCCCTTTTTCTCCTCCTCCTCCTCCTCCTTCCAATGTCTGTATGCAGAAATTTAGGCTATATGAGACTCGATCGAACTTTTACATGATAGGAAGGGACAAGAGCAGAACATATTGGAAAGTACTAAAGATTGACCGTCTCGATCCTTCTGAGCTAAATTTGCGTGAAGATTCCACCACATATACAGAAAGTGAATGCTCTGATCTTTTGAGACGGATACATGAGGGTAACAAGTCCACTGGTGGACTAAAATTTGTTACAACTTGTTATGGAATTGTAGGGTTCATCAAATTTTTGGGGCCTTACTACATGCTGCTTATCACAAAAAGAAGGCAAATTGGTGCAATCTGTGGTCATACAGTATATGCTGTCTCAAAGAGCGAGATGATTCCATTGCCAAATTCTTCAGTTCGGTCTAACATCAATTTTAAAAATGAAAACAGGTACAAGAGGCTCCTATGCATGGTCGACCTTACAAAGGACTTTTTTTTCAGCTATTCATACCAAATTATGCGTAGTCTTCAAAGGAACATGTGTGATAATGAGACAGGCCATGTTCTTTATGAGACCATGTTTGTTTGGAATGAGTTCTTAACTCGAGGAATTAGGAATCACCTCCAGAATACTATTTGGACAGTTGCGCTAGTGTATGGATTTTTTAAACAGGAAATGCTAATGATATCCAGACGGGAGTTCACACTTACGCTCATTGCAAGACGATCACGTCATTATGCTGGCACTAGGTATTTGAGGCGTGGTGTTAATGAGAAAGGAAGAGTAGCAAATGACGTTGAGACAGAACAAATAGTCTTTGAGGATGTTGCAGAAGGTCTTCCCATCCAAATAAGCTCTATCATCCAGAACCGTGGTTCAATCCCTCTTTTCTGGTCACAGGAAACTTCAAAACTAAATATTAAACCAGATATTATATTGTCAAAAAAGGATCAGAGTTATCAAGCCACTAGATATCACTTTGAAAACCTTGTCAAAAGATATGGAAATCCCATAATTATTTTGAATTTAATAAAGACCCATGAGAAGAAGCCTCGCGAGTCCATACTTCGTCAAGAGTTTGCTAATGCCATAGATTTCATTAATAAAGATTTATCGGACGAAAACAGGCTTAGGTTCCTTCATTGGGATCTGCACAAACATTTTCAGAGCAAAGCTACAAATGTCTTGCAGCTTCTCGGCAAAGTGGCTGCATATGCATTGACATTAACAGGGTTTTTCTATTGCCAAACAACACCAACCTTGAGACCAGAAGAATGTCTGAAATGGCCAAGTACCAACAATGTTGATAAGGGAACCTTTTCACCTACTAGACATGTCAATGATGACAACAGGGTTGACAACAGGGATGCAGATGAAAATTATTCTGTCAAACCACCCATGTTGCAGAGGGGGGTGCTCAGGACCAACTGCATAGACTGCTTGGATCGCACAAATGTTGCACAATATGCATATGGGTTGGCTGCTCTTGGCCACCAGCTCCATGCTCTGGGGGTTATTGACCACCCAAAAATTGATCTTGATGAGCCTGTAGCAGATGATTTGATGGGGTTTTATGAGCGGATGGGTGATACACTTGCACATCAGTATGGTGGTTCTGCTGCACACAACAAGATTTTCTCTGAGAGGAGGGGCCAGTGGAGAGCTGCAACACAGTCTCAGGAGTTTTTTAGGACTCTTCAACGCTATTATAGCAATGCATACATGGATGCTATGAAACAGGATGCAATCAATGTATTCCTGGGGCATTTTCAGCCACAACAGGGCAAGCCTGCTCTATGGGAGTTGGGTTCAGATCAGCTCTATGATGCAGGAAGACATGGAGATGATGATGCAAGGTCATTTTTCAAAAGATCCTTCTCAGATGGAAACATTCTTAATGAAAGTTCTACACCGATGTCAGCCCCAAAGGCCAAGCACGAAAAATTCCCAAGCCAAGGCGGCTTACCAGATCGATCAGAAGAAGGAAGCAAGGGTCTTTGTGAGTCATCACCAGAAATATCCACTACTGACAGTGACATCTCATTTTCAAGGTACACTCCCTCAATGCCTCGGAGACAGCTCTTTGGAGATATGCAAAGAGAGCGCTGCCTTGAAAGTGAACATATTTACTATTCTGATCACGGGGATTCCTTCAGCTGCTCCAACTTTGTTGACCTGGATTGGCTCTCTTCTTCAGGAAATTCATGCGAAGAAGAGCCATTCGAGAGGTCATCAATTACCAACTCTCCAATTGCTGGAGTTTCTTCAGAAAATGTTATCAATGGAATGATGGTAGGTGAGGCAACTGCCTCCACTAGTGATTGGGGGGCCTCCAGCCTAAAGGGAAGGGAACAAACTGAATCCGAGTTATCTTACGATGATGCACGGTCCAACACACCAGAAGAATTTCCAGATACTTTTGTGAACTGGGTGACTTATGGACAAACACTTTGCCATTGA	2505	0.4232	MASLENEPCHTPSASDQSPFSPPPPPPSNVCMQKFRLYETRSNFYMIGRDKSRTYWKVLKIDRLDPSELNLREDSTTYTESECSDLLRRIHEGNKSTGGLKFVTTCYGIVGFIKFLGPYYMLLITKRRQIGAICGHTVYAVSKSEMIPLPNSSVRSNINFKNENRYKRLLCMVDLTKDFFFSYSYQIMRSLQRNMCDNETGHVLYETMFVWNEFLTRGIRNHLQNTIWTVALVYGFFKQEMLMISRREFTLTLIARRSRHYAGTRYLRRGVNEKGRVANDVETEQIVFEDVAEGLPIQISSIIQNRGSIPLFWSQETSKLNIKPDIILSKKDQSYQATRYHFENLVKRYGNPIIILNLIKTHEKKPRESILRQEFANAIDFINKDLSDENRLRFLHWDLHKHFQSKATNVLQLLGKVAAYALTLTGFFYCQTTPTLRPEECLKWPSTNNVDKGTFSPTRHVNDDNRVDNRDADENYSVKPPMLQRGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALGVIDHPKIDLDEPVADDLMGFYERMGDTLAHQYGGSAAHNKIFSERRGQWRAATQSQEFFRTLQRYYSNAYMDAMKQDAINVFLGHFQPQQGKPALWELGSDQLYDAGRHGDDDARSFFKRSFSDGNILNESSTPMSAPKAKHEKFPSQGGLPDRSEEGSKGLCESSPEISTTDSDISFSRYTPSMPRRQLFGDMQRERCLESEHIYYSDHGDSFSCSNFVDLDWLSSSGNSCEEEPFERSSITNSPIAGVSSENVINGMMVGEATASTSDWGASSLKGREQTESELSYDDARSNTPEEFPDTFVNWVTYGQTLCH	834

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	647	701	-	-
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	453	476	-	-
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	457	475	-	-
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	788	816	-	-
	Gma17g00424	834	PANTHER	PHOSPHOINOSITIDE PHOSPHATASE SAC3-RELATED	26	834	-	-
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	801	815	-	-
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	1	16	-	-
	Gma17g00424	834	PANTHER	POLYPHOSPHOINOSITIDE PHOSPHATASE	26	834	IPR043573	GO:0043813\|GO:0046856
	Gma17g00424	834	ProSiteProfiles	Sac phosphatase domain profile.	170	553	IPR002013	GO:0016791
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	683	701	-	-
	Gma17g00424	834	MobiDBLite	consensus disorder prediction	1	28	-	-
	Gma17g00424	834	Pfam	SacI homology domain	107	403	IPR002013	GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g00424	Gma-Chr17	3424398	3433186	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma17g00424	31	834	Acyl Lipid Metabolism Gene Families	AT5G20840	62.668	0.0	1023

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma17g00424	17	3424398	3433186	Gma04g00531	04	4722892	4742602	ECH
	Gma17g00424	17	3424398	3433186	Gma06g00522	06	4432738	4438692	ECH
	Gma17g00424	17	3424398	3433186	Gma17g00424	17	3424398	3433186	ECH
	Gma17g00424	17	3424398	3433186	Gma13g00948	13	23631000	23641077	GST
	Gma17g00424	17	3424398	3433186	Gma15g01706	15	18293998	18309836	PCT
	Gma17g00424	17	3424398	3433186	Gma09g00677	09	7974289	7990521	PCT
	Gma15g01706	15	18293998	18309836	Gma17g00424	17	3424398	3433186	PCT
	Gma09g00677	09	7974289	7990521	Gma17g00424	17	3424398	3433186	PCT