Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00416 ATGGCTATTATTCCATCTCCTAAAATTTTCCTCCTTCTCTTAGCATTCTTCTTCTCACATGCTATAGCTGCCAAATCCTCCAATGCTTCCACAACCACAACATTGCATGCAAACCTCTCTTCCTCAAACAGAACcaacccatttcctgaagttagcagcttcaattcatctaagctttcaatttcaataaacataaatccatacatcatcaacacccttcttaagtccctccaagcagcaatatctggagccacaaaactatctgatctatcaaacaatgctggaaacaacatcatagataacaaaataggagcagtccaagactactgtagagaacttcaacaatccaccttagcttccttaaaacgatcactatcaGGAATCCGTTCCCAAGACTCTAAAAAACTAGTTGATGCAAGAACCTACCTAAGTGCAGCACTCACCAACAAGGACACGTGTCTAGAGAGCATAGATTCTGCTTCGGGTACCCTTAAGCCAGTTGTAGTGAATTCTGTGATAAGCTCTTACAAAGATGTCAGTGAGTCTCTCTCAATGCTCCCTAAACCTGAGAGGAAGGCCTCCAAAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCGATGAAAAACCGTCGCCGTCTCTTGCAAAGCAATGATGGAGGAGAGCTTGTTGTGGCTGCTGATGGAACGGGAAACTTTAGCATCATCACTGAGGCTATCAACTTTGCTCCAAATGACAGTGCTGGTAGGACAGTGATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTGTTCTGTTTGGCGATGGAAAGGATGTTACAGTTATTACTGGCAACAGAAGTGTCGTTGATGGCTGGACCACTTTCAGATCCGCAACTTTAACTGTCTCTGGTGAGGGctttctggcacgtgatatagcttttgagaacaaggcagggccagagaagcttcaagcagtggccttgagagtgaatgcagacttcactgctttctacaggtgtgccatgtatggttaccaagacactctttatgtccactcctttagacaattctatagggaatgcgacatttttgggaccatagattacatatttgggaatgcagcagtggttttgcaTGCATCCAAAATTATCACAAGGATGCCAATGCCTGGTCAATTCACTGTCATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGTTCAATTCTAGCCACCACAGATTTGTACTCCAATTCTGGTAGTGTCAAGAGCTACCTTGGAAGGCCATGGAGGGGGACTGATAACCGAGTTAATTGGGCTGGGTACCATGTAATGGATTATGACAGTGCCTACAACTTCACAGTTTCTGAGTTTATTATTGGTGATGCTTGGCTTGGCTCTACTTCATTTCCTTATGATGATGGGATTTAA 1461 0.3025 MAIIPSPKIFLLLLAFFFSHAIAAKSSNASTTTTLHANLSSSNRTNPFPEVSSFNSSKLSISININPYIINTLLKSLQAAISGATKLSDLSNNAGNNIIDNKIGAVQDYCRELQQSTLASLKRSLSGIRSQDSKKLVDARTYLSAALTNKDTCLESIDSASGTLKPVVVNSVISSYKDVSESLSMLPKPERKASKGHKNRRLLWLSMKNRRRLLQSNDGGELVVAADGTGNFSIITEAINFAPNDSAGRTVIYVKEGTYEENVEIPSYKTNIVLFGDGKDVTVITGNRSVVDGWTTFRSATLTVSGEGFLARDIAFENKAGPEKLQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLHASKIITRMPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSNSGSVKSYLGRPWRGTDNRVNWAGYHVMDYDSAYNFTVSEFIIGDAWLGSTSFPYDDGI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00416 486 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 188 IPR035513 -
Gma17g00416 486 PANTHER PECTINESTERASE 7 441 - -
Gma17g00416 486 PANTHER PECTINESTERASE 442 485 - -
Gma17g00416 486 TIGRFAM PME_inhib: pectinesterase inhibitor domain 75 185 IPR006501 GO:0004857
Gma17g00416 486 SUPERFAMILY Pectin lyase-like 221 483 IPR011050 -
Gma17g00416 486 Pfam Pectinesterase 222 441 IPR000070 GO:0030599|GO:0042545
Gma17g00416 486 Pfam Plant invertase/pectin methylesterase inhibitor 76 174 IPR006501 GO:0004857
Gma17g00416 486 SMART PMEI_2 22 185 IPR006501 GO:0004857
Gma17g00416 486 PANTHER PECTINESTERASE 7 441 - -
Gma17g00416 486 PANTHER PECTINESTERASE 442 485 - -
Gma17g00416 486 CDD PMEI-like_3 47 185 - -
Gma17g00416 486 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Gma17g00416 486 Gene3D - 219 486 IPR012334 -
Gma17g00416 486 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00416 Gma-Chr17 3375412 3377808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00416 44 486 Carbohydrate Esterase AT2G26440 58.071 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00416 - K01051 gmx:102666380 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00416 17 3375412 3377808 Gma17g00416 17 3375412 3377808 ECH
Gma17g00416 17 3375412 3377808 Gma13g00954 13 23698824 23701451 GST