Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00409 ATGGGCTTCTACGCTGAAGATCCTCTCTCAGGCTTGACAATAGGCCAGGCCATATATGAGGTAGCTCTCATGATTGCAGTTCTGAGATGGGTCTTGTGCTTGATCTTCAGAGTGATCAACGACAGAAGAACAACACAATCCGACGAGACCCCAACACCAGAACCATGTTCTCAGATGACAAGGGACAAGGACAGCATTCTTTTGCTGACGACTTTCGGAGAGATTAAGGAGAGGCTTCCAGAGACAGAGGAGACGTGTGCGGTGTGCCTGAGCCAGCTGAGCGTGGAGGACGAGGTTAGGGAGCTCATGAACTGCTACCACGTGTTCCACAGAGAGTGCATAGACAGATGGTTGGAACACGAACACGAGAATCACAGCGCCACGTGTCCTATCTGCAGGGCTCCTTTGCTCAGTTCTTCTTGCCACCACAGCTCTGCCACGTGTCTGCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTCCTCTATCTCTTTGGAGATGATCTGCTTCCTTGTTAG 519 0.5183 MGFYAEDPLSGLTIGQAIYEVALMIAVLRWVLCLIFRVINDRRTTQSDETPTPEPCSQMTRDKDSILLLTTFGEIKERLPETEETCAVCLSQLSVEDEVRELMNCYHVFHRECIDRWLEHEHENHSATCPICRAPLLSSSCHHSSATCLPPPQPSWAVERLLYLFGDDLLPC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00409 172 SUPERFAMILY RING/U-box 79 139 - -
Gma17g00409 172 ProSiteProfiles Zinc finger RING-type profile. 86 133 IPR001841 -
Gma17g00409 172 SMART ring_2 86 132 IPR001841 -
Gma17g00409 172 SMART ringv_2 85 133 IPR011016 GO:0008270
Gma17g00409 172 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 171 - -
Gma17g00409 172 Pfam Ring finger domain 85 133 IPR001841 -
Gma17g00409 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 138 IPR013083 -
Gma17g00409 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00409 Gma-Chr17 3308789 3309537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00409 1 169 C3H Transcription Factor Family AT5G20885 46.448 2.48e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00409 K16281 - gmx:100306203 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00409 17 3308789 3309537 Gma17g00409 17 3308789 3309537 ECH
Gma17g00409 17 3308789 3309537 Gma13g00960 13 23766034 23766983 GST