Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00408 ATGTCAACAGCAGAAGCTCCTCCTTCTTTCCAAGAAGCAGCGCGATGCGTTGTCTGCAATTGCAGTTTCAACACTTTCAGAAGAAGGCACCACTGTCGATCCTGTGGGAGAACATTGTGTAATGAACATTCATCAAATCAAATGGCTTTACCACAATTTGGCCTTTACTCAAATGTCCGAGTATGTGCTGATTGTTTCAACAACTTGCGGTCTGGGAAGGATGAACCACAGACTTCTTCAGACGGAGTAAACAGTGTGACAGATACAATTTCTAAATTAGATATCAACGCAAATGTTGATTCAAAATCCATACTAACTGCAGAGACTAAGCTTTTGTCAGGCATTAAAGAGTGTAAATGTGGAATGCCACTTTGCATTTGTGAAGCTCCAACCCCTTCCTCTGATGCATTCCCCCAGCAGAAACCCAATCCAGTTATTGCAGCTCCATCAAATCCTAAACCTAAGAAGACAGATACTGTTCCGAAAATTAGAAGCTCCATTTCAACTAGTAAATTTAGTTCTATGTTTAACGTTGGTCATGTAACTAATGGTACCTCAGACAGACCCCAGATTGATTATGAAGTTACTGGAGAGGGTTTAAGAGAAGCAATAAAAAATAGTGACGTTGCTGCTGTTAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGCCTGGAATACAGAAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACCTTGCAATACAAAATGCGAAAGAAGATGGAGGAAGGTGGAGCAGTGGACCAAAGCATTTGA 876 0.411 MSTAEAPPSFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGLYSNVRVCADCFNNLRSGKDEPQTSSDGVNSVTDTISKLDINANVDSKSILTAETKLLSGIKECKCGMPLCICEAPTPSSDAFPQQKPNPVIAAPSNPKPKKTDTVPKIRSSISTSKFSSMFNVGHVTNGTSDRPQIDYEVTGEGLREAIKNSDVAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYRNAQGETPLDCAPATLQYKMRKKMEEGGAVDQSI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00408 291 ProSiteProfiles Ankyrin repeat region circular profile. 228 259 - -
Gma17g00408 291 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 1 284 - -
Gma17g00408 291 SUPERFAMILY Ankyrin repeat 201 271 IPR036770 -
Gma17g00408 291 SMART fyve_4 4 71 IPR000306 GO:0046872
Gma17g00408 291 SUPERFAMILY FYVE/PHD zinc finger 12 75 IPR011011 -
Gma17g00408 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 74 IPR013083 -
Gma17g00408 291 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Gma17g00408 291 Pfam FYVE zinc finger 11 70 IPR000306 GO:0046872
Gma17g00408 291 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 10 70 IPR017455 -
Gma17g00408 291 CDD FYVE_scVPS27p_like 10 66 - -
Gma17g00408 291 Pfam Ankyrin repeats (3 copies) 203 269 IPR002110 GO:0005515
Gma17g00408 291 Gene3D - 181 276 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00408 Gma-Chr17 3303400 3307348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00408 16 79 EF-hand Containing Proteins AT3G14270 34.286 2.51e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00408 - - gmx:100804827 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00408 17 3303400 3307348 Gma13g00961 13 23768320 23773305 GST