Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00407 ATGGCTGGTGTGAACCCCGAGGCAGGAGGGTGGAAGGCTTATCCTTCTGTTATGGAGACTGCTCTTGGTAGTAGTGGTGATGGAAGGCGTGGCCATAACATGAATGATGATGGGTCGGTGATGCATTTCTCTGCTACAAGGCCAGTGGCAGTGCCATCATCTGGACAGAATAAAGTAGTTCCTAGTCCAACTCAGTTTAGCATCCTCTACAAGGGGAAAATGTGTATCTATGAAGGAATTCCTGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGATACCCTTGACTTCATTCATTCCCAAAAGCCCTTCTTCTTCACAGGGAAACTCTACTAATTTGCCTTCACCACAATCAGTCAAGAGTTCCATTCGCAGGCTGCAAGATGAATTTCCACTAGCCCGAAGGCAATCACTTCAAAGATTTCTTGAGAAGCGAATAAACAGGTTGGCTAACAGATCCCCTTATGCCTTAACAAAAAAAGTGATTCACAACATAGACAACAACTTTTCTCCTGACGACACGCCAGATTTTGGTTCCTTGAACTTGAACTTTCTTTAA 594 0.4411 MAGVNPEAGGWKAYPSVMETALGSSGDGRRGHNMNDDGSVMHFSATRPVAVPSSGQNKVVPSPTQFSILYKGKMCIYEGIPAEKVREIMLIASVSAKSAEMKSGIPLTSFIPKSPSSSQGNSTNLPSPQSVKSSIRRLQDEFPLARRQSLQRFLEKRINRLANRSPYALTKKVIHNIDNNFSPDDTPDFGSLNLNFL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00407 197 SMART tify_2 59 94 IPR010399 -
Gma17g00407 197 Pfam Jas motif 143 167 IPR018467 -
Gma17g00407 197 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Gma17g00407 197 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 184 - -
Gma17g00407 197 Pfam tify domain 61 93 IPR010399 -
Gma17g00407 197 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 184 IPR040390 -
Gma17g00407 197 MobiDBLite consensus disorder prediction 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00407 Gma-Chr17 3295447 3298000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00407 63 167 Tify Gene Family AT5G20900 37.838 4.23e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma17g00407 tify 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00407 K13464 - gmx:100306655 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00407 17 3295447 3298000 Gma13g00962 13 23779824 23782534 GST
Gma17g00407 17 3295447 3298000 Gma15g01733 15 18876082 18879962 PCT
Gma17g00407 17 3295447 3298000 Gma09g00721 09 8693489 8697636 PCT
Gma15g01733 15 18876082 18879962 Gma17g00407 17 3295447 3298000 PCT
Gma09g00721 09 8693489 8697636 Gma17g00407 17 3295447 3298000 PCT