Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00400 ATGTGCCAAAGAAGCATGAGTGGTGGTGGCATGAAGCTGCTGAGGATGTTTGTGTTTGTGGGGTTGGTGATTGTGAAATGGGTGGAAGGCTTTGAGGATGCTAATGTGACAGACCTAGGCATGCAATATGTCAGTGGAAGAGGTTTCTACAGACCTTTGATGGTTGGTTTTACTCATATTAATGGTGCTGCTGCTAAAGGAGCTGTCTGCCTGGATGGATCTTTACCGGGGTACCACTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGGGAGGAGGCTGGTGTGGAACTGTAAAAAATTGTCTTTATAGTAAGAAAACACGTCATGGTTCATCATTTTTTATGGAAAAACAAATACCATTTATTGGGATATTGAGCAACAAAGCTGAGGAAAATCCAGattttttcagttggaatagaataaaaatccgttattgtgacggtgcatcatttagtggggaCAGTCAAAATGCGGGAGCAGGGTTGTATTTCAGAGGGCAGCGCATTTGGCAAGCTGCTATGGAAGATTTAATGTCAAAAGGGATGCGCTATGCCAAACAGGCTCTTCTATCTGGTTGTTCTGCGGGAGGTTTAGCTACTATTATACATTGTGATGAATTTCGGGAATTGTTTCCTAGAACCACAAGAGTAAAATGCTTAAGTGATGCTGGATTATTCCTTGATTCTGTTGATGTTTCTGGTCGTCGCAGCTTAAGGAATTTGTTCGGAGGTGTGGTTACCTTGCAGGGAGTGCAAAGAAGTCTTCCAAGGAGTTGTACTAGTCGCCTCAATCCAATTTTGTGCTATTTTCCTCAGCACTTAATTGCTGGTGTCAGGACACCACTGTTTCTTCTCAATGCAGCTTATGATACTTGGCAGATTCAAGCGAGTCTTGCTCCACCATCTGCTGACTACCACTGGAACTGGTATGAATGCAGAAAAAATTATGCACGTTGCAGTGCACCACAGATACAGTATCTTCAAGcaggtttccgaaatcagatgcttagatctacaagagccttctcacggtcttttaaaaatgggttgttcataaattcttgtttcgcccattgccaatcagaaagacaggatacatggtttgctcgtgattcccctcgtattggaaatagaGGGATTGCGGAGTCTGTTGGGAACTGGTATTTTGATCGAGTTAGTGTCCAGGCCATTGGCTGCCCTTACCCTTGTGACAAAACATGCCATAATTTGGTATTTAAGAGATAG 1263 0.365 MCQRSMSGGGMKLLRMFVFVGLVIVKWVEGFEDANVTDLGMQYVSGRGFYRPLMVGFTHINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTVKNCLYSKKTRHGSSFFMEKQIPFIGILSNKAEENPDFFSWNRIKIRYCDGASFSGDSQNAGAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLATIIHCDEFRELFPRTTRVKCLSDAGLFLDSVDVSGRRSLRNLFGGVVTLQGVQRSLPRSCTSRLNPILCYFPQHLIAGVRTPLFLLNAAYDTWQIQASLAPPSADYHWNWYECRKNYARCSAPQIQYLQAGFRNQMLRSTRAFSRSFKNGLFINSCFAHCQSERQDTWFARDSPRIGNRGIAESVGNWYFDRVSVQAIGCPYPCDKTCHNLVFKR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00400 420 Pfam Pectinacetylesterase 53 398 IPR004963 GO:0016787
Gma17g00400 420 PANTHER PECTIN ACETYLESTERASE 17 418 - -
Gma17g00400 420 PANTHER NOTUM-RELATED 17 418 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00400 Gma-Chr17 3245963 3250803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00400 54 420 Carbohydrate Esterase AT1G57590 68.392 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00400 K19882 - gmx:100791571 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00400 17 3245963 3250803 Gma17g00400 17 3245963 3250803 ECH
Gma17g00400 17 3245963 3250803 Gma19g02132 19 50212774 50217344 ECH
Gma17g00400 17 3245963 3250803 Gma03g02096 03 46496461 46500874 ECH
Gma17g00400 17 3245963 3250803 Gma10g01405 10 40932160 40937393 ECH
Gma17g00400 17 3245963 3250803 Gma20g00896 20 35338894 35343254 ECH
Gma17g00400 17 3245963 3250803 Gma13g00973 13 23838067 23844232 GST