Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00399 ATGGGAACATTAGAACAAATTGATGCTCCTCAAACCCAGTCATCATCATCTTCTTCTTCTTCCATCGATAGCAACAACAACCCTTCTAGGACTAGGACTCCACCATCCTCTTCCCCTTCATCAAGTCTATGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATCACCCTTCAATTCAACACGAAGGGAAGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGAAGCACCCTTGTGGGGAAACAAAGCTATCTGAGCCAAAGACCCTCTTTGTTTGTCAAAGTCTATATGGAAGGAATCCCCATCGGAAGAAAATTGAATCTGATGGCACATTATGGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACGAACATTCTCTGTCCTAACTCTCAACCACTTaattctgggaattttcacgtgctaacttatgaggatcaagaaggggactggatgatggttggagatgtgccgtgggagatgttcttgaacagtgtgaagaggctgaagatcacaagagctgaccgatgctag 585 0.3282 MGTLEQIDAPQTQSSSSSSSSIDSNNNPSRTRTPPSSSPSSSLCRNRTDLSTDLRLGLSISPSSQSESPFNSTRREESFDWPPIKSILRSTLVGKQSYLSQRPSLFVKVYMEGIPIGRKLNLMAHYGYDGLVKTLGHMFRTNILCPNSQPLNSGNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00399 194 MobiDBLite consensus disorder prediction 1 72 - -
Gma17g00399 194 Gene3D - 99 194 - -
Gma17g00399 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 194 - -
Gma17g00399 194 SUPERFAMILY CAD & PB1 domains 100 188 - -
Gma17g00399 194 Pfam AUX/IAA family 71 190 IPR033389 -
Gma17g00399 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 194 IPR003311 GO:0005634|GO:0006355
Gma17g00399 194 MobiDBLite consensus disorder prediction 1 77 - -
Gma17g00399 194 ProSiteProfiles PB1 domain profile. 104 193 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00399 Gma-Chr17 3233950 3234891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00399 108 188 B3 DNA Binding Superfamily AT4G23980 39.506 4.28e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma17g00399 AUX_IAA 5.2e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00399 K14484 - gmx:100527448 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00399 17 3233950 3234891 Gma17g00399 17 3233950 3234891 ECH
Gma17g00399 17 3233950 3234891 Gma13g00974 13 23855561 23856761 GST