Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00394 ATGGAGGGCAAAGTTGCATTGAAAAAATTGCTGGAAGTTCAGAAAAAGGCACATGTTAATAGTACAGATGCACTCAACTGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTACTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCACAAAATCATGAGCAACAGCACCTGAACCAATTGGGCTTGCTGCAAATTGAGCTAGAGGAAGTGAAGAAGGAGAATCAGAATTTAAGGTCCATGCTAAATAAGATCTCTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTCGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGAAATAATGAGGACATGCAGGCAAGTTTGACTTTGAATTTGGACAGCAGGCAAGAAGACATGGAGAAACCAGTGTTATCCTCCTGCAGCCAGTTCTTAAATACTGAAGGTAAATTCAATAAACAAGTAACAACATCACAAGAAGCAAAAACCATAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCACGATCAGAATCATCTTTGATGGGTGATGGGTGCCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGCCCTCGGGCCTACTATCGCTGCAACATGGGAACAGCTTGTCCGGTTCGCAAGCAGGTTCAAAGGTGTTCTGAGGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAAGTCCATGGCAAGCACAACATCAGCAGCACTGAAAATGTTCCTTTCCGGCTCAACCTCTAGTTCACACGGAAGCACTTATTCTTATTCAAATTCAGACCTCTTCTCTCCACTATTCACCTCTACCTACTATCCATCTGCATCATCATCATGTCCAACTATAAATTTGGACTTTACCCAAACCTCTAAGGACAACCTGAAATTTCCAAGTGTTATTTCTTCAAACCATTTGCAACCTTTTCCTCTTTCATTGCATGGTCAACCTCAACAATCTGAGGGAATATTACCCTCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGCTGCCATAACCAATGATCCTTCTCTTAAGGCAGCATTAGAAGCAGCTGTTTCCTCAATCATTGGAGACTCTCAGAACATCAATAACCATAGTCAATCACTACCAACTTTCTAA 1194 0.4229 MEGKVALKKLLEVQKKAHVNSTDALNWTEEPSIKNTLGSTLLSLSLNNLEPPQNHEQQHLNQLGLLQIELEEVKKENQNLRSMLNKISEHYAALQNQLLSAMQQKKLSSSPRNNEDMQASLTLNLDSRQEDMEKPVLSSCSQFLNTEGKFNKQVTTSQEAKTIEEQAFEASCKKARVSVRARSESSLMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCSEDESVVITTYEGNHNHSLPPAAKSMASTTSAALKMFLSGSTSSSHGSTYSYSNSDLFSPLFTSTYYPSASSSCPTINLDFTQTSKDNLKFPSVISSNHLQPFPLSLHGQPQQSEGILPSEKNLALVDVVSAAITNDPSLKAALEAAVSSIIGDSQNINNHSQSLPTF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00394 397 Coils Coil 56 104 - -
Gma17g00394 397 SMART WRKY_cls 188 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g00394 397 Pfam WRKY DNA -binding domain 190 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g00394 397 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 392 - -
Gma17g00394 397 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 392 IPR044810 GO:0003700
Gma17g00394 397 ProSiteProfiles WRKY domain profile. 183 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma17g00394 397 Gene3D WRKY domain 171 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma17g00394 397 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00394 Gma-Chr17 3188507 3192874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00394 160 313 WRKY Transcription Factor Family AT4G04450 60.256 1.36e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma17g00394 WRKY 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00394 - - gmx:100779314 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00394 17 3188507 3192874 Gma13g00979 13 23895542 23899527 GST
Gma17g00394 17 3188507 3192874 Gma01g00390 01 4785070 4790972 PCT
Gma15g01753 15 19494775 19500393 Gma17g00394 17 3188507 3192874 PCT