Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00389 ATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAAATTGCCCAACTACGCAACCCTACTCCTTCTTCTCCGCATCAACGCCACCATTCTGCAACTGCAACAACCAACCACCTTCCTCCGAAACCCCTTCCCGATTCGCGTCCCCAAACTGCTGGTACTTTGTCTCAAGCAGCAAGAGCATTGCCCACGTCATTCAAATCAGGGACAAACAACGACAAGCAGTCAAAAGAGCTGCCAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCCAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCATTGTTAGAAGCAGAGAAGGTTCTTGGAGAAATACCTAGTTATAGTGTTCAGGTAGATAACTTAGATCCCTTAGTGAAACGTGCTGTTGCTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTACAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCTTGCATACAGGACTTGTGGCCTGTTCTCATAATTGCACCGTCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATGACACATGACTTTAAGGTTGTGATTGCTGATGAGTCGCATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAATTATTCAAGCAGTTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGTTACTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGAAAACAAGGACATGAAGCAAATTAATGCTCTATTTCAAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCTAAGATTCCATCTGTTCTTGATTATATCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCTTCTAGGCAACAATTGGTTACAGACTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGTCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTATAGACCAGTATGTTAGAAAATCTGATAACATGGGTAGTTTGGTGAGTAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGCGATAATACGGATAGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAGCTGA 2127 0.4208 MEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPSSPHQRHHSATATTNHLPPKPLPDSRPQTAGTLSQAARALPTSFKSGTNNDKQSKELPKFSVKFFLHSSGNVAAKFQYDQVVIAAFRRIPRSSWNAKERLWIFPLSSLLEAEKVLGEIPSYSVQVDNLDPLVKRAVAAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDLWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTHDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGVFGVYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLENKDMKQINALFQELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYIGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENVLEVSASLPVNSPSKQKTIDQYVRKSDNMGSLVSSPSKQKTLDQFVRRCDNTDRLEYEPNPKRPRS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00389 708 Pfam SNF2-related domain 211 471 IPR000330 GO:0005524|GO:0140658
Gma17g00389 708 MobiDBLite consensus disorder prediction 20 68 - -
Gma17g00389 708 Gene3D - 165 422 IPR038718 -
Gma17g00389 708 Coils Coil 445 469 - -
Gma17g00389 708 SMART ultradead3 189 382 IPR014001 -
Gma17g00389 708 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 674 IPR030101 GO:0006281|GO:0031297|GO:0036310
Gma17g00389 708 CDD SF2_C_SNF 489 613 - -
Gma17g00389 708 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 374 IPR014001 -
Gma17g00389 708 MobiDBLite consensus disorder prediction 27 51 - -
Gma17g00389 708 CDD DEXHc_HARP_SMARCAL1 193 416 - -
Gma17g00389 708 ProSiteProfiles HARP domain profile. 86 163 IPR010003 -
Gma17g00389 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 645 IPR027417 -
Gma17g00389 708 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 645 IPR001650 -
Gma17g00389 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 416 IPR027417 -
Gma17g00389 708 Gene3D - 459 693 IPR027417 -
Gma17g00389 708 Pfam Helicase conserved C-terminal domain 501 602 IPR001650 -
Gma17g00389 708 SMART helicmild6 519 602 IPR001650 -
Gma17g00389 708 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00389 Gma-Chr17 3151925 3162557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00389 383 629 RAD5 or RAD16-like Gene Family AT1G61140 28.462 1.09e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma17g00389 SNF2_N 8.2e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00389 K14440 - gmx:100778246 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00389 17 3151925 3162557 Gma17g00389 17 3151925 3162557 ECH
Gma17g00389 17 3151925 3162557 Gma13g00981 13 23921375 23931841 GST