Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00370 ATGGCATCCGATCTAAATTCGGGGTTGTCCCAGGAAACGTCTGTTTTTGGGTTGAAAGCATGGGAATTGATGGGGATAATAGTTGGGTTGTTCATTATAATTATTCTCGTGGTGATATCAATATGTCTTACTTCAAGAAAGAAATCTAGAAGAGTCAATGGCATGCTTCCCCTTAGCCATATGTTATCGGTTTCAGATGAGATCAAGGAAATTAGAGTTGATCAAGTTTCAGCCAATAATCATCCTCAGAATGGAGCTTTTGTGAGTCTGTATGACAGGTTTAGTGACAGGGATTCTGAAAAAGTTTTGATCCAAACAAATAACGGGGAAAATAGCAGTCAATCAGGCTCATTTGTTCATCTTAAGAAAGATGATGGCTCTCAATCAGGCGAAGAAAGTGGTGCTAAGTCTGTTTCTACTTACAGGTCTTCTTCACATCCTATAACTGCACCGTCCCCCTTGTGTGGTCTGCCTGAATTTTCTCACCTTGGCTGGGGACACTGGTTTACGTTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCAAAAGACAATGTTATTGGTGAAGGTGGATATGGTGTTGTTTATCAGGGCCAGTTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGGCACAAGAATTTGGTTAGACTTTTAGGCTATTGCATTGAAGGCACTCACAGGTTGCTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCGGCAGTATGGTTTTCTTACTTGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGCTAGCTTACTTGCACGAGGCAAttgagccaaaagttgtacatcgagatattaaatcaagcaatattctaattgatgatgacttcaatgccaaaatatctgactttgggctggcAAAGTTATTGGGTGCTGGAAAAAGTCATATCACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGATTACTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTATTGCTCCTCGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGACCAGCAACTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGAATAGGCGCGCAGAAGAGGTGGTAGACCCTAACATTGAGACCAGGCCATCAACAAGTTCCCTTAAACGTGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAAGAATATCCCATACCACGCGAGGATCGAAGACGCCGAAAGAGCCAGGCAGGAAATATGGAGCTGGAGGCCCAGAAGGAGACCTCCGACACAGAGATGACTGAGAATCCAGATTCCAAGTCCAATGGCAGAAGGAACCAAAGGAAGTAG 1512 0.4067 MASDLNSGLSQETSVFGLKAWELMGIIVGLFIIIILVVISICLTSRKKSRRVNGMLPLSHMLSVSDEIKEIRVDQVSANNHPQNGAFVSLYDRFSDRDSEKVLIQTNNGENSSQSGSFVHLKKDDGSQSGEESGAKSVSTYRSSSHPITAPSPLCGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSSLKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNMELEAQKETSDTEMTENPDSKSNGRRNQRK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00370 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Gma17g00370 503 MobiDBLite consensus disorder prediction 105 122 - -
Gma17g00370 503 Gene3D Transferase(Phosphotransferase) domain 1 257 469 - -
Gma17g00370 503 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00370 503 PANTHER RECEPTOR-LIKE KINASE PLANT 2 503 - -
Gma17g00370 503 SUPERFAMILY Protein kinase-like (PK-like) 165 461 IPR011009 -
Gma17g00370 503 MobiDBLite consensus disorder prediction 452 503 - -
Gma17g00370 503 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Gma17g00370 503 Pfam Protein kinase domain 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00370 503 CDD STKc_IRAK 187 453 - -
Gma17g00370 503 Gene3D Phosphorylase Kinase; domain 1 163 256 - -
Gma17g00370 503 MobiDBLite consensus disorder prediction 105 144 - -
Gma17g00370 503 PANTHER OS01G0323000 PROTEIN 2 503 - -
Gma17g00370 503 ProSiteProfiles Protein kinase domain profile. 181 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00370 Gma-Chr17 3014604 3019530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00370 17 455 Trihelix Transcription Factor Family AT1G70460 40.312 4.23e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma17g00370 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00370 - - gmx:100793499 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00370 17 3014604 3019530 Gma17g00370 17 3014604 3019530 ECH
Gma17g00370 17 3014604 3019530 Gma15g01790 15 20715694 20720135 PCT
Gma17g00370 17 3014604 3019530 Gma09g00761 09 9736440 9740827 PCT
Gma15g01790 15 20715694 20720135 Gma17g00370 17 3014604 3019530 PCT
Gma09g00761 09 9736440 9740827 Gma17g00370 17 3014604 3019530 PCT