Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00366 ATGGAGGCTGAGTTTGGAGCGAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTCACTGCTCAACCACTCAATTCAGTGCCATCTGATTGTAGGGGTCGCCAGTTTTCCCCACCTCATCCTGAAATTCCTGCAAAAAATGCTAATCCATCTACCACCAATTTGTCTTATTCTGTTTTCATCTCAGGTGAAGGAAAGAGGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGTGAAGGTGAAGGTGAGGGACTGAATTATGAGGCTGGTTCTCTTAGTTTGAACCTTGCGGGTCAAGGTTACCCTCTCATGGTGGAAGAAGAAGAAAAGAGTGGAAAGAAAACAAAGGTAATTGGGACCACTACAGCTAGTACTACCACTGCCTCTAATCGTGCTGTTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCATAAGGTTTGTGATATTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAGCAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGCAAGAGAAGTTGTCGAAGGCGTTTGGCAGGCCACAATAGGAGGAGGAGGAAAACTCATCCTGATGTTTCTGTTGTTAATGAAGGCTCTCTGAACGATCAAAGGGGCAGTAACTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTACATTCAAATGGCTCAGATCATACAAGGAACCAGGATATTCTCTCTCATCTGCTGAAGAACCTGGCAAGTCTGGCTGGTCCAAATAATGGTGGAAGGTTAGCACCCTTACTGGAGGAATCGAAAGACTTGGTAAATGCTGGGACGCCCGGAGCTGCTCAGGATAAACCCAACCTTAACTCAAATGCTCCTGAAGCTTCCAGGCCTTCTTCTTTCATCAAGACAGACAATGTCATCATCACTCAGGACCCTACAATGCCGGTGGCGCAGTATGAAACACCTGCTGATGGCAGGACACAAAAATGTATAGCTTCAGGTGATGGTGGAGTAGGAAATTCAAAACCTCCTTCAAGACCACTGTTCTCAAATGTATGTCAACCAAGGGACAGCCTTCCATCCCAATTAACTACAGCAGAGACTAAAGTAGGAAGGGGAAACTTGAATAACATTGACCTTAATAATGGTTACAATGATATACAGAATACTGTTGAGAATCATAAGAAGCCTTATCCTCCTGTGGCTTCAGTGATGGGGTCTATTGACCGTGCCTCATGGTTGCAGCGTGATTCTCTCAAATCAAGTCCTCCACAGACAAGTAGAAACTCAGATTCAACCTCTATCCAATCACCATCCAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCATCTGATTTTCCCCTTCTTATCCGATCACAGATTCTCAACTGGTTATCCCACAGTCCCACGGAGATGGAGAGCTATATAAGGCCAGGTTGTATAATATTAACGATATACCTCCGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCAAGCTTGAGAAAGCTTCTTGCCGAATCAAATGATTCATTTTGGAGAACAGGATGGGTATATGCAAGGGTGCAGCACTCTGTAGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGCATCTCAAAAGCCCACAACATTGTAGGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGTGCTCAATTTATTGTGAAAGGTTTCAACCTTTTCCAGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACATGCTAGCTGTCATGGTTTGATTGGTGGAGCTGATGCACCCATTCAGCATCTAAGCTTCTCTTGTCATATACCAAATGTAACTGGGAGGGGGTTCATTGAGGTGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAGGTTTGTTCAGAGATCTGCAAACTAGAAAATGTGATTGAGGCAGCTGAAACCACTGATGACATCCAGATAAAAAAACAACAAATGGAAGAAATGACTAGAGCTTTGGATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCATGTGAAAGTTAAGCTTGGTCCCATGGCTCCTTTCCGTGATCTCTTCCAATTCAATCGGTTCGCTTGGCTCGTTGACTTCTCCATGGACCATGGCTGGTGTGCTGTGATGAACAAACTCTTGGACATTATATTTGAGGGTGGTGTTGATGCGGGAGAGCATGCCTCCATTGAGCTTGCATTGTTAAACATGGGTCTTCTACACACAGCTGTAAAGAGAAATTGTAGACCTATGGTAGAACTACTGTTAAGATTTGTGCCAGTTAAAACCTCAGATGGTGCAGACAGTGAAGTGAAGCAAGTTGACGAAGCCTCTGACAGATTCTTGTTTAGACCTGATACTGTTGGGCCAGCTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTTGGAGGATGTGTTGGATGCATTAACCGATGATCCACGAATGTTAGGAATTGAGGCATGGAAAAGTTCCCGGGACAGTACAGGTTTGACCCCTAACGACTATGCATGCCTTAGGGGCTATTACTCCTACATTCAACTAGTCCAGAAGAAGACCAACAAAAAAGGTGAAAGACAGCATGTGGTTGATATCACTGGCATTGTTGTAGATAGTTACACGACGCAGAAGCAATCAAATGGACATAGGACATGTAGAGTTTCAAGCTTGCAGACTGAGAAGATTGAAACAACAACAATGCCACGTCAATGTCGGGCATGA 2943 0.4417 MEAEFGAKNQYLYGPVVSGMKKAVVGNGKRSLEWDLNDWRWDGDLFTAQPLNSVPSDCRGRQFSPPHPEIPAKNANPSTTNLSYSVFISGEGKRELEKRRRGVIGEGEGEGLNYEAGSLSLNLAGQGYPLMVEEEEKSGKKTKVIGTTTASTTTASNRAVCQVQDCRADLSNAKDYHRRHKVCDIHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVSVVNEGSLNDQRGSNYLLMSLLRILTNLHSNGSDHTRNQDILSHLLKNLASLAGPNNGGRLAPLLEESKDLVNAGTPGAAQDKPNLNSNAPEASRPSSFIKTDNVIITQDPTMPVAQYETPADGRTQKCIASGDGGVGNSKPPSRPLFSNVCQPRDSLPSQLTTAETKVGRGNLNNIDLNNGYNDIQNTVENHKKPYPPVASVMGSIDRASWLQRDSLKSSPPQTSRNSDSTSIQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPLLIRSQILNWLSHSPTEMESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLAESNDSFWRTGWVYARVQHSVAFLYNGQVVLDVPLHLKSPQHCRISCIKPLAVPASASAQFIVKGFNLFQSSTRLLCALEGKYLVHASCHGLIGGADAPIQHLSFSCHIPNVTGRGFIEVVEDHGLSSCSFPFIVAEQEVCSEICKLENVIEAAETTDDIQIKKQQMEEMTRALDFLQEMGWLLHRSHVKVKLGPMAPFRDLFQFNRFAWLVDFSMDHGWCAVMNKLLDIIFEGGVDAGEHASIELALLNMGLLHTAVKRNCRPMVELLLRFVPVKTSDGADSEVKQVDEASDRFLFRPDTVGPAGLTPLHVAASMSGLEDVLDALTDDPRMLGIEAWKSSRDSTGLTPNDYACLRGYYSYIQLVQKKTNKKGERQHVVDITGIVVDSYTTQKQSNGHRTCRVSSLQTEKIETTTMPRQCRA 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00366 980 MobiDBLite consensus disorder prediction 319 336 - -
Gma17g00366 980 MobiDBLite consensus disorder prediction 455 484 - -
Gma17g00366 980 MobiDBLite consensus disorder prediction 225 246 - -
Gma17g00366 980 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Gma17g00366 980 Coils Coil 711 738 - -
Gma17g00366 980 MobiDBLite consensus disorder prediction 313 336 - -
Gma17g00366 980 MobiDBLite consensus disorder prediction 382 397 - -
Gma17g00366 980 Pfam SBP domain 161 234 IPR004333 GO:0003677
Gma17g00366 980 Gene3D - 797 945 IPR036770 -
Gma17g00366 980 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Gma17g00366 980 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 979 IPR044817 GO:0003677
Gma17g00366 980 SUPERFAMILY SBT domain 159 240 IPR036893 GO:0003677|GO:0005634
Gma17g00366 980 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 21 979 - -
Gma17g00366 980 MobiDBLite consensus disorder prediction 368 397 - -
Gma17g00366 980 SUPERFAMILY Ankyrin repeat 806 925 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00366 Gma-Chr17 2989024 2994477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00366 27 937 SBP-box Gene Family AT3G60030 46.587 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma17g00366 SBP 9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00366 - - gsj:114419913 1748.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00366 17 2989024 2994477 Gma17g00366 17 2989024 2994477 ECH
Gma17g00366 17 2989024 2994477 Gma15g01801 15 20992345 21003172 PCT
Gma17g00366 17 2989024 2994477 Gma09g00765 09 9808976 9820920 PCT
Gma15g01801 15 20992345 21003172 Gma17g00366 17 2989024 2994477 PCT
Gma09g00765 09 9808976 9820920 Gma17g00366 17 2989024 2994477 PCT