Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00354 ATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGAACATTCCGATGTTGGACGTGAAGTATCATATTTGCGTGGCTCAAGAACACAACGTGAAGGTTGAGGTTTCACCCAAATCACCTTCACCTCCTGTTCCGATCTTTGGCCAAGCAGTGAGTTGCTCTGAGATCATTAAAGATTCCATTTTGGAGGCCCCTGCGATGAATTTTTTCCCAAATGTGCGTTCTGGTAGCTATGCCGAGATTGGACCGCGCGTTTCTATGGATGATGAACACATTTGTATTGATGATCTGGGAGCTCATCTTGGATTTGTGTTCAAGTGTCCGATACCGAGTGCATTTTATGCAGTTTTTGATGGCCATGGGGGGCCTGATGCAGCAGCCTTTGTTAAGAGGAATGCTATGAGGTTGTTTTTTGAAGATGCAGACATGCTGCAGTCGTATGATGCTGATGCGTTTTTTCTACAGAAATTGGAGGATTCCCATCGGAGAGCTTTTCTACGGGCAGATCTTGCCTTGGCTGATGAACAAACTGTTGGTAGTTCTTGTGGGACTACTGCATTGACTGCCCTTGTGCTTGGAAGGCATTTGCTTGTTGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGCCGGAGAGGTGTGGCTGTTGAGATGTCTAATGATCACAGGCCAAGTTATCTACCAGAGAAGAGGAGGGTGGAGGAGTTAGGTGGGTTCATTGATGATGGATATCTCAATGGTTATCTTTCAGTAACTCGAGCCCTTGGGGATTGGGACTTGAAATTTCCACTTGGTGCTGCATCCCCTCTTATTGCTGAGCCAGATGTTCGGCTGGTTACATTGACTGAGGGTGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCGGAGAGCTAGTCAAGGAAGCATTGCGCCTAAATACATCAGATAATCTCACTGTAATTGTTGTATGCTTGTCGCCCATTGAAAGCATTGTTGAATCATGTCCACCCCAAAGGAGAAGATTCAAAGCTTGCAGTTTGTCTGAAGAGGCCCGTAATAGATTGAAGAGCTTGATTGAGGGAAATTGA 1143 0.4602 MVAEAEIICQQNIPMLDVKYHICVAQEHNVKVEVSPKSPSPPVPIFGQAVSCSEIIKDSILEAPAMNFFPNVRSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKCPIPSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDADMLQSYDADAFFLQKLEDSHRRAFLRADLALADEQTVGSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSYLPEKRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLVTLTEGDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCAGELVKEALRLNTSDNLTVIVVCLSPIESIVESCPPQRRRFKACSLSEEARNRLKSLIEGN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00354 380 PANTHER PROTEIN PHOSPHATASE 2C 1 367 IPR015655 GO:0004722|GO:0006470
Gma17g00354 380 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Gma17g00354 380 CDD PP2Cc 72 343 IPR001932 -
Gma17g00354 380 SUPERFAMILY PP2C-like 68 345 IPR036457 -
Gma17g00354 380 Pfam Protein phosphatase 2C 83 335 IPR001932 -
Gma17g00354 380 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Gma17g00354 380 SMART PP2C_4 63 341 IPR001932 -
Gma17g00354 380 Gene3D - 64 346 IPR036457 -
Gma17g00354 380 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 367 - -
Gma17g00354 380 SMART PP2C_SIG_2 88 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00354 Gma-Chr17 2852234 2855088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00354 1 379 PP2C-type Phosphatase Gene Family AT1G48040 57.692 8.14e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00354 K14803 - gmx:100775577 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00354 17 2852234 2855088 Gma17g00354 17 2852234 2855088 ECH
Gma17g00354 17 2852234 2855088 Gma09g00288 09 2657905 2660461 PCT
Gma09g00288 09 2657905 2660461 Gma17g00354 17 2852234 2855088 PCT