Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00331 ATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2202 0.4891 MSYHNARQSPGGFRSGAAPHHRAFDSPPHRSPGRGGGFRPMGAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLPLPSQQVHGVSGQFPTSQPQTQQSALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00331 733 SUPERFAMILY WW domain 590 623 IPR036020 GO:0005515
Gma17g00331 733 CDD RRM2_FCA 178 257 IPR034645 -
Gma17g00331 733 SUPERFAMILY RNA-binding domain, RBD 72 171 IPR035979 GO:0003676
Gma17g00331 733 MobiDBLite consensus disorder prediction 624 645 - -
Gma17g00331 733 Gene3D - 83 172 IPR012677 -
Gma17g00331 733 MobiDBLite consensus disorder prediction 468 488 - -
Gma17g00331 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Gma17g00331 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 246 IPR000504 GO:0003723
Gma17g00331 733 MobiDBLite consensus disorder prediction 257 294 - -
Gma17g00331 733 Gene3D - 173 265 IPR012677 -
Gma17g00331 733 Gene3D - 587 634 - -
Gma17g00331 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Gma17g00331 733 ProSitePatterns WW/rsp5/WWP domain signature. 591 616 IPR001202 GO:0005515
Gma17g00331 733 SMART rrm1_1 87 163 IPR000504 GO:0003723
Gma17g00331 733 SMART rrm1_1 178 253 IPR000504 GO:0003723
Gma17g00331 733 CDD WW 588 618 IPR001202 GO:0005515
Gma17g00331 733 SUPERFAMILY RNA-binding domain, RBD 177 280 IPR035979 GO:0003676
Gma17g00331 733 ProSiteProfiles WW/rsp5/WWP domain profile. 591 618 IPR001202 GO:0005515
Gma17g00331 733 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 53 686 - -
Gma17g00331 733 MobiDBLite consensus disorder prediction 363 448 - -
Gma17g00331 733 MobiDBLite consensus disorder prediction 1 81 - -
Gma17g00331 733 SMART ww_5 586 618 IPR001202 GO:0005515
Gma17g00331 733 MobiDBLite consensus disorder prediction 625 645 - -
Gma17g00331 733 Pfam WW domain 589 616 IPR001202 GO:0005515
Gma17g00331 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Gma17g00331 733 PANTHER TRANSFORMER-2-RELATED 53 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00331 Gma-Chr17 2651697 2661709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00331 84 268 Eukaryotic Initiation Factors Gene Family AT1G71770 25.373 5.11e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00331 - - gmx:100786792 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00331 17 2651697 2661709 Gma17g00331 17 2651697 2661709 ECH