Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00328 atggcatcgtcaccttcatcatcatcgtcgtcgtcgtcgtctatggtcTCAAATCCAGTTCCGAACACGGACCGGTCACGTGACGCGAAACGGAGGAAGAAGAAAGCGCAGCTGAGGCAGCAACTACGGCAAGAGGACCAGAGCAATCCCAAGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTTAACCTCGGGTCGTCGGCGCCGCCGCGCCGAGGCAAAGCCGTGCGCGACGCCGCCGACAGAGTCCTAGCCGTGACGGCCAAGGGGAGGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACAAAACACAAGCGACAGAGAGTTACAATTACAACACCCCCAACCCGGTCAAAGAAACCCCGGGTCAGCGTTTACCGGCTGAAGGGGAAGGGTTCGCCGGGTGTGCAGAGAAAAGTGAGGTTTCTCGGACGCTTGGTTCCCGGTTGCCGAAAAGAACCGTTACCGGTTATTTTGGAAGAAGCCATTGATTACATACCCGCGCTTGAGATGCAGGTTCGAGCCATGAGCGCTCTCTTTAACCTTCTCTCCGGCGGCGGCGCCGCCTCCACTTCCGCGCCACCTAGCTCGTCATAG 645 0.5426 MASSPSSSSSSSSSMVSNPVPNTDRSRDAKRRKKKAQLRQQLRQEDQSNPKWKSQAQQQIYSSKLRQALARVNLGSSAPPRRGKAVRDAADRVLAVTAKGRTRWSRAILTNRLKLKFTKHKRQRVTITTPPTRSKKPRVSVYRLKGKGSPGVQRKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMSALFNLLSGGGAASTSAPPSSS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00328 214 MobiDBLite consensus disorder prediction 1 56 - -
Gma17g00328 214 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 212 IPR044660 GO:0006355
Gma17g00328 214 CDD bHLH_AtIBH1_like 143 195 IPR044549 GO:0006355
Gma17g00328 214 MobiDBLite consensus disorder prediction 42 56 - -
Gma17g00328 214 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g00328 214 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 15 212 - -
Gma17g00328 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00328 Gma-Chr17 2607636 2608660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00328 47 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 54.696 2.23e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00328 - - gmx:100803765 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00328 17 2607636 2608660 Gma17g00328 17 2607636 2608660 ECH
Gma17g00328 17 2607636 2608660 Gma15g01296 15 11486036 11487263 PCT
Gma17g00328 17 2607636 2608660 Gma09g00309 09 2926308 2928086 PCT
Gma15g01296 15 11486036 11487263 Gma17g00328 17 2607636 2608660 PCT
Gma09g00309 09 2926308 2928086 Gma17g00328 17 2607636 2608660 PCT