Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma17g00326 | ATGGCACCTGAAAACCCTTCAACGCCAGATCCCGAATCGCCAACCTCTCCTTCCGTTGGTTTCAACACCGACCAGCTTCCTCACACCCACACCAGCCATGCCTCCCAAGACGACGAGGCTTCCGTCGATCCCGATATCGTACGAGACGACATTGAAGAACAGCCCGAGGAAGAAGAAGAAGATGGAGAGGATCTTTACAATGACAATTTTTTGGATGATTATAAGAGAATGGATGAGGCTGACCAGTTCGAATCGTTCGGGCTGGACGACTCGTTGGAAGACGACAGAGATTTTGATCAGATCATGCAAGATCGAAGGGCTGCGGAGGTTGAACTCGAGGCGCGCGATGGTCGCGCTTCCAATCGTAACAAGCTTCCCCAGCTTCTCCACGACCAGGATACAGATGATGACAATCACAGGTCTTCTAAAAGGGCTCGAGCTGATTTTAGACCTTCTGTAGCAAGTGATGATGACTTTGATGGTATGCAAAGTTCACCTGGAAGGTCACAACGGCACTCAAGAGAGGATATTCTTATGACTGATCAAACGGAGGATGATCGAGATGACGATGATTTTGATGATGGATACGAGATGTATCATGTTCAAGGTACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCTTACTTACTTATCTTAATCCAAAAAATGAACATCGGGACAAGGAATATGTCTGGCTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTATGTTCATCCCAACATTGCCATTTGGCTAGCTGATGCCCCTCAATCTGTCTTAGAAGTAATGGAAGATGTTACGAAAAATGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAGATTTATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGCAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAATGCGGGGCAATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAGAGTCCAGGGATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTAAATGATCTGATTGATTGTGCACGCCCTGGAGAAGAAATTGAGGTCACAGGTGTTTATACCAATAATTTTGACTTATCCTTAAACACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTTTTTTCTGCCTACAAACTTACACAGGAAGACATAGAAGAGATTGAAAATTTGGCTAAAGACCCTCGAATTGGAGAAAGGATTGTTAAGTCTATTGCTCCATCAATCTATGGTCATGATGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAACGTGGAAGGAAAGCACCGCCTGCGGGGAGACATAAATGTTCTTCTTCTGGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAGTATGTTGAGAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGCTTCTGCCGTGGGTCTTACAGCTGCCGTTCATAAGGATCCAGTCACAAGGGAGTGGACTCTTGAAGGGGGAGCACTTGTTCTAGCTGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTGAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGCTCTGTTATTGCTGCTGCAAATCCTGTTGGAGGAAGATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAGGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCTTTAGTGAGTTCCAAGATATCCATGCATCTGCCATGCCAGCTGATCCAGAGATACTTCCTCAACAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATTTTTCCAAGGTTACAAGATGCTGATATGGATAAACTGTCACATGTCTATGCCGAACTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCACATGCGAGAATGCATCTCAGGCAACATGTTACACAAGAGGATGTAGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCAACTCAAAAATTTGGGGTGCAGAAGGCTCTTCAGAAGAGCTTTAGAAAGTATATGACTTTCAAAAAGGACTACAATGAACTGCTCCTTTATATTCTTCGCGAGCTTGTAAAGAATGCTCTGCATTTTGAAGAAATTGTCACCGGATCTGCTTCTGGTCTAACTCACATAGATGTCAAAGTAGATGATCTCTACCACAAGGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGACATCACCTTACCAGATGA | 2811 | 0.4255 | MAPENPSTPDPESPTSPSVGFNTDQLPHTHTSHASQDDEASVDPDIVRDDIEEQPEEEEEDGEDLYNDNFLDDYKRMDEADQFESFGLDDSLEDDRDFDQIMQDRRAAEVELEARDGRASNRNKLPQLLHDQDTDDDNHRSSKRARADFRPSVASDDDFDGMQSSPGRSQRHSREDILMTDQTEDDRDDDDFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYLNPKNEHRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKNVVFELHPNYRNIHQKIYVRITNLPVYDQIRNISRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIEEIENLAKDPRIGERIVKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLATFVVDSHFKSQPKGAKQDDKSFSEFQDIHASAMPADPEILPQQLLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNALHFEEIVTGSASGLTHIDVKVDDLYHKAQEHDIYDLKPFFNSSHFSRANFVLDEERRVIRHHLTR | 936 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma17g00326 | 936 | Pfam | MCM N-terminal domain | 220 | 313 | IPR027925 | - | |
| Gma17g00326 | 936 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
| Gma17g00326 | 936 | Gene3D | - | 325 | 446 | IPR012340 | - | |
| Gma17g00326 | 936 | PANTHER | DNA HELICASE | 138 | 925 | - | - | |
| Gma17g00326 | 936 | Pfam | Mini-chromosome maintenance protein 2 | 37 | 176 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma17g00326 | 936 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 510 | 833 | IPR027417 | - | |
| Gma17g00326 | 936 | SUPERFAMILY | Nucleic acid-binding proteins | 221 | 469 | IPR012340 | - | |
| Gma17g00326 | 936 | MobiDBLite | consensus disorder prediction | 128 | 155 | - | - | |
| Gma17g00326 | 936 | Gene3D | - | 348 | 398 | - | - | |
| Gma17g00326 | 936 | CDD | MCM2 | 503 | 829 | - | - | |
| Gma17g00326 | 936 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 629 | 642 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 680 | 688 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 653 | 665 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 541 | 556 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 601 | 615 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 138 | 925 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 330 | 347 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 449 | 460 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 464 | 475 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 388 | 402 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma17g00326 | 936 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 353 | 365 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gma17g00326 | 936 | Gene3D | - | 212 | 316 | - | - | |
| Gma17g00326 | 936 | Pfam | MCM P-loop domain | 487 | 710 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | Pfam | MCM AAA-lid domain | 747 | 830 | IPR041562 | - | |
| Gma17g00326 | 936 | MobiDBLite | consensus disorder prediction | 43 | 67 | - | - | |
| Gma17g00326 | 936 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
| Gma17g00326 | 936 | MobiDBLite | consensus disorder prediction | 109 | 193 | - | - | |
| Gma17g00326 | 936 | ProSiteProfiles | MCM family domain profile. | 500 | 706 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | SMART | mcm | 316 | 831 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gma17g00326 | 936 | ProSitePatterns | MCM family signature. | 609 | 617 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Gma17g00326 | 936 | Pfam | MCM OB domain | 320 | 447 | IPR033762 | - | |
| Gma17g00326 | 936 | Gene3D | - | 480 | 853 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma17g00326 | Gma-Chr17 | 2593688 | 2598786 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma17g00326 | 1 | 931 | Core DNA Replication Machinery Family | AT1G44900 | 75.027 | 0.0 | 1367 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma17g00326 | K02540 | - | gmx:100813006 | 1808.88 |