Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00294 ATGGCGAATAACTTAGCGGCGCAACAACTGGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGGCACCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTCCGTAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACCGTTAAAGAAGCTCATGAGCACCTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAGGATAACCCAAATTTTGTCCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAATACAGGAGATGCAAGGTTCTCCCGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGAACCACAACTGCATATGCTGGTGACACGAGTGCCAATATAAATGTCAAAAGTCATGAACTCAGACTTCATGAGATTAATACACTTGATTGGGATGACCTGGTGGATGCAAATGATCATAACACAACTACTGTGCCTAATGGAGGTACTGTTCCATATTTTGATCTACAAGATCAAATTTTACTGAATGACAGTTTCAGCAATGTAGCCAACAATCTATCTGCAGACATTCCTTCTTTTGGTAGTCTCACTCAGCCTATTGCTGGGAGCAACAGTGTTCCTTACAATTTTTCAAGTGTTAATCTTCAGACGATGGACGATCAAGCAAATCCACATGAGCAGAGGAATAATACAGTTTCCTTAAGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGATTGCAAAGTCAGAACAGCTTTGGAATGTGGGTAAACCCCATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTTGAATCCCCAGTTTCATCCGTTCATGAACCATATTCATCTCTGATAGTGGATAGTCAGCAATCTTCTCTGCCAGGACAAGTATTTACTATCACTGATGTATCCCCTACATGCGTATCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTTTTTCATAAGGACTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGGTGCTGGGTATCACCACATTCTCCAGGATTCGTGAATCTCTACATGAGCATTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCCTGCTTTGCATGATCCCGCCGTTTCAATGGAAGAGAGTGACAATTGGGATGAGTTTCAACTACAAATGAGGCTTGCATATTTGCTCTTTAAACAATTGAACCTTGATGTTATCTCCACTAAAGTATCACCCAATAGACTTAAAGAGGCTAGACAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCTCTATTCGGAATTGCATTGAAAAGCAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGCTGCAAGACTACTGAATATGATGCTCATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTGTTTTCATGGTCAGGCTTGTCATTGGATTTCCGTGATAGGTCTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCGAAGCCAAATTTGGTCACTGATCCTACTCCCCAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCACTTGAAACTAGCACGACTGATCCGGTAATTTCTGCAAACCTTACGGAGGACCAGCAGAACCTGAAGGATACATTGGCAGCTTACCGAACTGCTGCTGAGGCAGCTTCCCGCATACATGCTGCATTTAGGGAACACTCTCTAAAACTGAGAACTAAGGCGGTTGCATCTTCCCATCCAGAGGCTCAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACCACAAGACAAAGAAAGTGATGGCAGCTGCTGCTCGCATACAGTGTACATACCGTACATGGAAGATTCGTAAAGAATTTCTCAACATGCGTTGTCAGGCTGTTAAAATTCAAGCTGCGTTCCGGTGCTTTCAAGTGCGGAAGCATTATTGCAAAATTCTTTGGTCTGTTGGTGTCGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGTTTCCGTGGGCTCCAGGTCAAAACTGTCGAAGCGGGAACTGGAGATCAGGATCAGCAAAGTGATGTAGAGGAGGAATTCTTCCGGGCTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTGGTACGTGTGCAGGCTATGTTCCGTTCGAAGAAAGCACAAGAAGAGTACAGGAGGATGAAATTGGCCCTTGATCAAGCAAAGCTTGAGCGAGAATTCGAACGACTTCTTAGTACTGAAGTTGACATGCAACTGAAGACATAG 2757 0.4273 MANNLAAQQLVGSEIHGFHTLQGTIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAYAGDTSANINVKSHELRLHEINTLDWDDLVDANDHNTTTVPNGGTVPYFDLQDQILLNDSFSNVANNLSADIPSFGSLTQPIAGSNSVPYNFSSVNLQTMDDQANPHEQRNNTVSLSGVDSLDTLVNDRLQSQNSFGMWVNPIMSDSPCSVDDPALESPVSSVHEPYSSLIVDSQQSSLPGQVFTITDVSPTCVSSTEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYMSIDGHKPISQVVNFEYRTPALHDPAVSMEESDNWDEFQLQMRLAYLLFKQLNLDVISTKVSPNRLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKSRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRSGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVISANLTEDQQNLKDTLAAYRTAAEAASRIHAAFREHSLKLRTKAVASSHPEAQARKIVAAMKIQHAFRNHKTKKVMAAAARIQCTYRTWKIRKEFLNMRCQAVKIQAAFRCFQVRKHYCKILWSVGVVEKAVLRWRLKRRGFRGLQVKTVEAGTGDQDQQSDVEEEFFRAGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALDQAKLEREFERLLSTEVDMQLKT 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00294 918 SMART CG_1_2 25 143 IPR005559 GO:0003677
Gma17g00294 918 SMART ANK_2a 600 629 IPR002110 GO:0005515
Gma17g00294 918 SMART ANK_2a 639 668 IPR002110 GO:0005515
Gma17g00294 918 Pfam Ankyrin repeats (3 copies) 550 629 IPR002110 GO:0005515
Gma17g00294 918 SUPERFAMILY E set domains 365 452 IPR014756 -
Gma17g00294 918 SMART iq_5 763 785 IPR000048 GO:0005515
Gma17g00294 918 SMART iq_5 867 889 IPR000048 GO:0005515
Gma17g00294 918 SMART iq_5 786 808 IPR000048 GO:0005515
Gma17g00294 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 22 918 - -
Gma17g00294 918 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Gma17g00294 918 ProSiteProfiles IQ motif profile. 765 793 IPR000048 GO:0005515
Gma17g00294 918 Pfam IQ calmodulin-binding motif 766 784 IPR000048 GO:0005515
Gma17g00294 918 Pfam IQ calmodulin-binding motif 791 807 IPR000048 GO:0005515
Gma17g00294 918 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Gma17g00294 918 ProSiteProfiles Ankyrin repeat region circular profile. 600 628 - -
Gma17g00294 918 Pfam CG-1 domain 28 141 IPR005559 GO:0003677
Gma17g00294 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 22 918 - -
Gma17g00294 918 SUPERFAMILY Ankyrin repeat 549 664 IPR036770 -
Gma17g00294 918 Coils Coil 881 901 - -
Gma17g00294 918 ProSiteProfiles IQ motif profile. 787 811 IPR000048 GO:0005515
Gma17g00294 918 ProSiteProfiles CG-1 DNA-binding domain profile. 22 148 IPR005559 GO:0003677
Gma17g00294 918 Gene3D - 763 811 - -
Gma17g00294 918 Gene3D - 532 670 IPR036770 -
Gma17g00294 918 Gene3D Immunoglobulins 359 455 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00294 Gma-Chr17 2379404 2386529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00294 25 901 CAMTA Transcription Factor Family AT3G16940 54.773 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gma17g00294 CG-1 2.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00294 K21596 - gmx:100807130 1838.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00294 17 2379404 2386529 Gma17g00294 17 2379404 2386529 ECH
Gma17g00294 17 2379404 2386529 Gma15g01339 15 11902904 11913123 PCT
Gma17g00294 17 2379404 2386529 Gma09g00345 09 3238890 3249640 PCT
Gma15g01339 15 11902904 11913123 Gma17g00294 17 2379404 2386529 PCT
Gma09g00345 09 3238890 3249640 Gma17g00294 17 2379404 2386529 PCT