Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00290 ATGAGAGTTGAGAAAGGAGCAAAAAATGAAGGTGGATATGTTGGTGGTTTCTTCCACTTGTTTGACTGGACCTCAAAATCTCGTAAGAAATTATTTGCAGCCAAGTCAGATTTGCCAGAGTCCTCAAAACAGAGAAGAAAGGTTGATGGCAACATGGCAATGGTGCTGCCCTATCTGGTGGACGAAGATGATGAAATTGGAGTAGGGAAAGGTATTAGAGAATGTAGTGATCATAGTTGTGCTTCATCTGTTATAGATGATGAAGTTTGTGGAACAAGGAGCCCTGGTGTAGTTGCCAGGCTTATGGGATTAGATTCATTGCCCTCTTCCAGTTTTCTGGATCCATATTTTACCCCATACTTTGACAGCCAATCTCTTCAAGATGTGCTGTACTGGAGAACAAAATTTAATCATCTGCATGACCATCAGATCCTGTATTCTGGAAAGTCGATTGAAAAAGCTGAGGGATCTTCTAGGAACTTCATGGAGGAAAAGCCTCAACAGACCCGTAGCAGGCCGATTGAAAAGTTTCAAACAGAAGTAATGCCTCCCAAATCAGCTAAATCTATTCCTTTTGCACACCATAAACTTTTGTCCCCAATTAAGAGCCCTGGCTTTGTTCCAGCAAATAATGCTACTTATATAATGGAGGCTGCTGCAAGAATTATTGAACCTGGCCCCCAAGCTACTACAAAGGCTAAAACCTCTCTGGTAGCATCATCAACAGTATCACTGAGGGTTAGAGATTTTAAAGAAAAAGCGGAGGCTTTACAAAAAGGACCTCTAATTGGGTCATCTTCATTAACTTCTAGAGTTAGAGATCTAAAAGAAAAAAGAGAAACTTCTCATAGAACTATCAGGCTTTCGAAACCTTCTCAAAGGTCGACTGAGTCTTATGATGCCCAGTATCTAAAGGGACAATCTTTCAACAGAAGTTGGAATGGATCTGTGGATACACAAGTCAGATCATCCTCTCAAGCAGAAGAagattcttctttgaaaaataaagggaagtctatttcacttgcaatccaagcaaaagtgaatgttcaaagaagggaaggcttGAGCTTTAGTAGTGGAAAAAGTTTGGTAGAGCAGAAAGAACAATATGACATTAAAACCCCCCAGCAATCTCTGAAGGCTAATGTTCATAGAAGTTTGCATAAGAAATCCTCTGGTCAAGATGCTTCTGGTGTCCTCAGGCAGAATAATCTGAAACAGAATTGTTCAATGGAAAAAGACAAACTACCATCAAAGCCACTGGTTTCCAATTCAAACGGTAGGAAAGTTGTGACTGGGGATTCCTCTTGTGGATGTCATAGAAGCTCTAGTAGTAAAGCCACTGCAAAATCTAAAGTTGGGCCCAAAAAATCATCCATGAATGTGACAGATAGTGAAAAGGAAGTCTTATATACTCGTACCAACAATTTCCCAAGGAAGAAGAGGACCACAGACAGGGACTGGAATGATAGGGTTGTTGATAATTTGTTTATTGACAAAACTCAGAAGCCTGTTAAGTCTAATTTAGTTAGTAATAAACACCATGGTGGGGCTGAAGAAGTAAAAAATAAAGACATGGATGTAGTTTCCTTCACATTTACGACGCCATTGACAAGATGCAATTCTGATTTTGAGACATCTGGACAAACTGGCCTGAAGACTGATAGCCTTTCTTTGGATCAGCATATTAGAAGAGTGTTGCTTGACACTGACATTGACACTGATAGTACAAGGACTCCGGTAGGATACAATGCTATTGGTGGCGATGCCTTAGGTATCCTTTTGGATCAGAAGCTGAGGGAATTAACATATGGAGTTGAGaattcttgtgatgactccttcaaagcaaggtcaccttccagtaattcttgtgatgactccttcaaagcaaggtcaccttccagtaCTGTACCAAAATCAAAAGATCTTGTCTCCACCCTTAATTCAGTCAACCTATTTCTGGAATTGCAACAGAAGACCGACCAAGACATGATCTGGACAGACAAATTATTCAGTAGCCGTGAATGTGACATTTCCTTCACTTGTCTTCCAGAAATATCATCCAAGCATAGACTCTGGATGGAGGAGTGTAAGATCAATCCTATGGAAGCAGAGTTATTCAGTCCCGGACAGCCGAGTCCAATGTCTGTTCTTGACCCTTCTTTCTCTACTCAAAGCTGTGAATCTCCATTCAGCACAAATGCTGCTAGTTCAGTAGATCAAAACAGGAAGCAGGTTGTGGGCTCAGGAAGTGGCTTGAATTCCTCTAGAAAGTACCATCATGCAGAAGCTGATACAGAATTGTTTGATTCAGCATCAAGTTCGACCGTGCTAAAGAAACAAGCAAGTCCATGTTCTCAAATGAAGTTTGGAGGATCAAGAACATGGGAGTTAGATTATGTGAATGATATATTGTGTAATGTGGAGTTGATGTACATGGACTTTTCTCTTGGTAGAGCTCGTGACATTGTGAACCCTCATCTGTTCAACCAGTTGGAAAGTCGAAGAGGAAGAAGGTTTGAGAGTGATGGTGGTGAGTGTAGGATGAGAAGGAAAGTTATATTTGATTGTGTGAGTGAGAGTTTGGACTTAAGATGCAGGCGTTATGTTGGTGGAGGGTACAAAATGTGGGGCAAAGGGGTTGCAATGGTGAGAAGAAATGAATGGTTGGCAAGGGAAGTGTACAAGGAAATTTCAAGCTGGAGGGACATGGGGGATTCAATGGTGGATGAACTCGTAGATAGGGACATGAGCATCGAATATGGGCGATGGCTAGATTTTGAGGTTGATACTTATCAACTTGGTTCACTGGTTGAAGACCAAATATTTAATTCTTTGGTTGATGACTTCGTTGCTGAAATCCTGCAATTATAA 2877 0.3869 MRVEKGAKNEGGYVGGFFHLFDWTSKSRKKLFAAKSDLPESSKQRRKVDGNMAMVLPYLVDEDDEIGVGKGIRECSDHSCASSVIDDEVCGTRSPGVVARLMGLDSLPSSSFLDPYFTPYFDSQSLQDVLYWRTKFNHLHDHQILYSGKSIEKAEGSSRNFMEEKPQQTRSRPIEKFQTEVMPPKSAKSIPFAHHKLLSPIKSPGFVPANNATYIMEAAARIIEPGPQATTKAKTSLVASSTVSLRVRDFKEKAEALQKGPLIGSSSLTSRVRDLKEKRETSHRTIRLSKPSQRSTESYDAQYLKGQSFNRSWNGSVDTQVRSSSQAEEDSSLKNKGKSISLAIQAKVNVQRREGLSFSSGKSLVEQKEQYDIKTPQQSLKANVHRSLHKKSSGQDASGVLRQNNLKQNCSMEKDKLPSKPLVSNSNGRKVVTGDSSCGCHRSSSSKATAKSKVGPKKSSMNVTDSEKEVLYTRTNNFPRKKRTTDRDWNDRVVDNLFIDKTQKPVKSNLVSNKHHGGAEEVKNKDMDVVSFTFTTPLTRCNSDFETSGQTGLKTDSLSLDQHIRRVLLDTDIDTDSTRTPVGYNAIGGDALGILLDQKLRELTYGVENSCDDSFKARSPSSNSCDDSFKARSPSSTVPKSKDLVSTLNSVNLFLELQQKTDQDMIWTDKLFSSRECDISFTCLPEISSKHRLWMEECKINPMEAELFSPGQPSPMSVLDPSFSTQSCESPFSTNAASSVDQNRKQVVGSGSGLNSSRKYHHAEADTELFDSASSSTVLKKQASPCSQMKFGGSRTWELDYVNDILCNVELMYMDFSLGRARDIVNPHLFNQLESRRGRRFESDGGECRMRRKVIFDCVSESLDLRCRRYVGGGYKMWGKGVAMVRRNEWLAREVYKEISSWRDMGDSMVDELVDRDMSIEYGRWLDFEVDTYQLGSLVEDQIFNSLVDDFVAEILQL 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00290 958 MobiDBLite consensus disorder prediction 271 287 - -
Gma17g00290 958 Pfam Domain of unknown function (DUF4378) 798 950 IPR025486 -
Gma17g00290 958 MobiDBLite consensus disorder prediction 733 757 - -
Gma17g00290 958 MobiDBLite consensus disorder prediction 393 412 - -
Gma17g00290 958 MobiDBLite consensus disorder prediction 733 758 - -
Gma17g00290 958 MobiDBLite consensus disorder prediction 315 336 - -
Gma17g00290 958 MobiDBLite consensus disorder prediction 271 298 - -
Gma17g00290 958 MobiDBLite consensus disorder prediction 375 466 - -
Gma17g00290 958 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 259 956 - -
Gma17g00290 958 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 259 - -
Gma17g00290 958 PANTHER EXPRESSED PROTEIN 1 259 - -
Gma17g00290 958 PANTHER EXPRESSED PROTEIN 259 956 - -
Gma17g00290 958 MobiDBLite consensus disorder prediction 420 466 - -
Gma17g00290 958 Pfam DUF761-associated sequence motif 82 112 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00290 Gma-Chr17 2339787 2343193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00290 15 956 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 30.155 6.63e-93 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00290 - - gmx:100804990 1889.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00290 17 2339787 2343193 Gma17g00290 17 2339787 2343193 ECH
Gma17g00290 17 2339787 2343193 Gma15g01345 15 11986422 11990222 PCT
Gma17g00290 17 2339787 2343193 Gma09g00351 09 3312194 3316251 PCT
Gma15g01345 15 11986422 11990222 Gma17g00290 17 2339787 2343193 PCT
Gma09g00351 09 3312194 3316251 Gma17g00290 17 2339787 2343193 PCT