Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00289 ATGAAGCTATTTGGTTTTCCCTTGAAGGGTTCCATAAGCACTAGTGAGGACATACCATGTGTCGTCGACGATAGTGGTGGCAAGAAATTCAAGTGCCGCTACTGTCGTCGCCAATTTGCGAATTCTCAAGCACTAGGAGGCCACCAAAATGCGCATAGGAAAGAACGTGCTAAGCTAGCCCAGTTCAAATATCTTCTCCGTCTTCAGCAACATGATCAGTACCATCATAGGTTCAAAGAAGCATCAAATGGTTCACCCAGCGTTAGTGTTGTTGGTAGTGCAATTACTAGTGCTGCTGCTGGTGCAGCTTTGTTTGAATTTCATAGTGCAGCTGCAGGATCATCACATCTTGGGACAGTGCCAGCGAGTGGCAATGATGTAGTGGATCTCAACCTCAGACTAGCTTGCTCCTCAGAGAACTTCAAGAACTGA 432 0.463 MKLFGFPLKGSISTSEDIPCVVDDSGGKKFKCRYCRRQFANSQALGGHQNAHRKERAKLAQFKYLLRLQQHDQYHHRFKEASNGSPSVSVVGSAITSAAAGAALFEFHSAAAGSSHLGTVPASGNDVVDLNLRLACSSENFKN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00289 143 Gene3D Classic Zinc Finger 18 87 - -
Gma17g00289 143 SUPERFAMILY beta-beta-alpha zinc fingers 26 57 IPR036236 -
Gma17g00289 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Gma17g00289 143 PANTHER ZINC FINGER PROTEIN 5 1 137 IPR044299 GO:0010090
Gma17g00289 143 PANTHER ZINC FINGER PROTEIN 8-LIKE 1 137 - -
Gma17g00289 143 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00289 Gma-Chr17 2332263 2332694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00289 1 75 C2H2 Transcription Factor Family AT1G67030 45.679 2.38e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma17g00289 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00289 - - gmx:102665791 269.24