Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00286 ATGTCGCTCAGGCCAAATGCCAGAACCGAGATTCGCCGCAACCGTTACAAGGTCGCCGTCGACGCCGACGAGGGCCGCCGGAGAAGAGAGGACAACATGGTCGAGATCCGCAAGAGCAAGCGCGAAGAGAGTTTGCTCAAGAAGCGTCGTGAAGGCCTCCAAGCTCAGCAACAGTTTCCCGCTCCTCTTCAGAACTCCACCGTCGACAAGAAGCTGGAGAGTCTTCCTGCCATGGTTGCTGGAGTTTGGTCGGATGATAATAGTATTCAACTTGAAGCCACTACGCAATTTCGCAAGCTGCTTTCGATTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGAGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTAGTGCTCAGCCAAGGTGCCCTCGTCCCACTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGCAGGGGTAAGCCACAGCCTCCGTTTGAGCAGGTAGTGAGACCGGCACTTCCAGCACTCGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGCCAGATTGGTGCAGCTTCTCATACACCCATCTCCCTCAGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATTATCAATCATGGTGCACTCCCCTGCCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGACTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAATGCGGAATTTGACATTAAAAAGGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGAATTCATGAGCAGATCAAgtacttggaGATGGTGCTCAACCTGGTTTCAATTTCGGAAACAATGAGCTTCCAGTCCCATCTGGTGGATTCAACTTCAGCTGAAGATATTTTCCTGAGAAGGGACTTGTTGGACGAAGTAGGGTTTATGCCGGGTGGGCGTTGGGATAAAGTCTGGAGGGTCAGTTATTGCACCTTGTGTCCTTCGTGGTTCATGAGGTGCCGGGGAGGGTCAGTCTACGCTACCAAGTCCAATGGCAGGGACACGGGCAACATTTCTAATAACTTGTCCAAATGGAGAAAGGTGCGTGGCAGGTGGAATAGACTATATAGCATGACCTTACTTCAACATCAACAGTAA 1563 0.4702 MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFPAPLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLEMVLNLVSISETMSFQSHLVDSTSAEDIFLRRDLLDEVGFMPGGRWDKVWRVSYCTLCPSWFMRCRGGSVYATKSNGRDTGNISNNLSKWRKVRGRWNRLYSMTLLQHQQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00286 520 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Gma17g00286 520 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 234 273 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 360 400 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 148 188 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 275 315 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 189 231 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 317 358 IPR000225 GO:0005515
Gma17g00286 520 SMART arm_5 105 146 IPR000225 GO:0005515
Gma17g00286 520 Coils Coil 36 56 - -
Gma17g00286 520 Gene3D - 11 50 IPR036975 GO:0006606
Gma17g00286 520 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Gma17g00286 520 PANTHER IMPORTIN ALPHA 2 410 - -
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Gma17g00286 520 Pfam Armadillo/beta-catenin-like repeat 237 272 IPR000225 GO:0005515
Gma17g00286 520 Gene3D - 73 432 IPR011989 -
Gma17g00286 520 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Gma17g00286 520 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Gma17g00286 520 PANTHER IMPORTIN SUBUNIT ALPHA 2 410 - -
Gma17g00286 520 SUPERFAMILY ARM repeat 12 409 IPR016024 -
Gma17g00286 520 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Gma17g00286 520 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00286 Gma-Chr17 2316821 2322843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00286 131 392 U-box Gene Family AT3G46510 25.660 3.87e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00286 K15042 - gmx:100792804 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00286 17 2316821 2322843 Gma17g00286 17 2316821 2322843 ECH
Gma17g00286 17 2316821 2322843 Gma19g02179 19 50627414 50633346 ECH
Gma17g00286 17 2316821 2322843 Gma03g02147 03 46928886 46934168 ECH
Gma17g00286 17 2316821 2322843 Gma10g01472 10 41818670 41824474 ECH
Gma17g00286 17 2316821 2322843 Gma20g02228 20 49397462 49401869 ECH
Gma17g00286 17 2316821 2322843 Gma15g01350 15 12053015 12056785 PCT
Gma17g00286 17 2316821 2322843 Gma09g00356 09 3354140 3359146 PCT
Gma15g01350 15 12053015 12056785 Gma17g00286 17 2316821 2322843 PCT
Gma09g00356 09 3354140 3359146 Gma17g00286 17 2316821 2322843 PCT