Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00283 ATGCTCCTCCGAAGCCACTGTTGCTACCTCGGCATAATCGCCGGGCTAGCAGTGTTCCTCGCAACGACGTCGTTCGCCGACGCGCAATCCTGCAACGGCATCCTCGTCTCATACGCCTACACCGGCGGCCTGCGGTTGCCGCCCAACGTCTCCGACTCGGCTAAGCAGCCGTACCGGTTCGAGTCGACGGTGACGGTTCTCAACAACGGCCTCGACGAGCTCAAGTCGTGGAAGGTCTTCGTTGGGTTCGACCACGACGAGTTGTTGGTCTCCGCCTCCAATGCTGTGCTCGCCGACGGCACCACCCTCCCCGCCGCCGTCGGAAACGGCACCGTCTTCGCCGGTTTCCCCATGACTGATCTCAAGACCGCCGTCGAAACCGCCGGCGACTTGACCCAGATGCAGGCTCAGATCGAACTCGTCGGCACCGTGTTCGGGGTGGCGCCGCCCAGTGTTCCGATGCCGAAATCCATCAACCTCGCCAATGATGGTTTCCTCTGTCGCAAATCCACCGCTCAAGGGAAGAATGCGAGTAGTGTGTGTTGCACGAGAGATCCCAAGTTCAAAACTAACATTACTACGGATGAAGAGTTTCTGCCACGTCAGAGTGGTGATCTTACCATTATGTATGATGTGATCAGAACTTATGATTCAAATTACTGGGCTGAGGTTACCGTTGCAAACCATAACCCACTTGGGAGGCTTGATAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTTATATATTCAATGAAAGGGGCTTATCCTTCGGTTGTGGATGCTTCTGATTGTCTCTTTGGTAAGCAAGGAACTTTCTATAGGGATCTTGACTTTGCCCTTGTGTTGAATTGTGAGAGAAGGCCAACCATAATTGATCTCCCTCCCACCAAGTTCAATGATTCCGACCTTGGGAAGATTCCCTTTTGTTGCCGGAATGGTACTATTTTGCCTCCGTCCATGGATCCTAGCATGTCTGCTTCGAGATTCCAAATGCAGGTCTTCAAGATGCCGCCGGCGCTTAACCGATCCCAGCTTTCGCCACCGCAGAACTGGAAGATAAGTGGCACACTCAACCCTGACTATGAATGTGGCCCTCCAGTAAGAGTGAGTCCTACCGAAAATCCTGACCCGTCCGGCTTACCTTCAAACAAAACTGTGATGGCCAGTTGGCAGGTTGTGTGCAACATAACAACAGCCAAGAGAACATCAAGTAAATGCTGTGTCTCGTTTTCATCTTATTACAATGATTCAGTTATTCCATGCAAAACATGTGCTTGTGGATGCCCCAAGAACACAGAGAGAACATGTAGTACTAGTGCTCCAGCTATGTGGCTTCCACCAGAGGCACTTCTTGTTCCCTTTGTGAACCGAACTGCCAAGGCTGTTGCTTGGGCAAGTCTGAAACATCTCCGGGTGCCAAACCCATTGCCGTGTAGCGATAACTGTGGTGTGAGCATCAATTGGCATTTGTACACAGACTACACTAAAGGATGGAGTGCAAGGGTGACACTTTTTAACTGGGGTGACACTAATTTTGCAGACTGGTTTGCCGCAGTACAAATGGACAAAGCAGCTTCGGGTTTTGAGAAAATGTATTCATTCAATGCAACTCTTCTAGATGGTGTAAACAATACAATAATCATGCAAGGTTTGCCAGGATTGAACTACCTTGTAGCAGAAGCAGATGGAGCTGACCCTTTGAGAGATCCTAGGGTGCCTGGTAAACAACAATCAGTTATCTCATTTACAAAGAAAACTACTCCTGGAATCAACGTAGCTCGTGGAGATGGGTTTCCCACTAAGGTATTTTTCAATGGCGAAGAATGTTCTCTTCCTTCAGTGTATCCAAGCAGTAGTGGTTTCAGGAATGGTTTTTCATTGGCTACTTCCTTGCTTCTAACACTGTTGATGATCCTCTTGATGCGGTAA 1935 0.4956 MLLRSHCCYLGIIAGLAVFLATTSFADAQSCNGILVSYAYTGGLRLPPNVSDSAKQPYRFESTVTVLNNGLDELKSWKVFVGFDHDELLVSASNAVLADGTTLPAAVGNGTVFAGFPMTDLKTAVETAGDLTQMQAQIELVGTVFGVAPPSVPMPKSINLANDGFLCRKSTAQGKNASSVCCTRDPKFKTNITTDEEFLPRQSGDLTIMYDVIRTYDSNYWAEVTVANHNPLGRLDNWRLSWDWMNDEFIYSMKGAYPSVVDASDCLFGKQGTFYRDLDFALVLNCERRPTIIDLPPTKFNDSDLGKIPFCCRNGTILPPSMDPSMSASRFQMQVFKMPPALNRSQLSPPQNWKISGTLNPDYECGPPVRVSPTENPDPSGLPSNKTVMASWQVVCNITTAKRTSSKCCVSFSSYYNDSVIPCKTCACGCPKNTERTCSTSAPAMWLPPEALLVPFVNRTAKAVAWASLKHLRVPNPLPCSDNCGVSINWHLYTDYTKGWSARVTLFNWGDTNFADWFAAVQMDKAASGFEKMYSFNATLLDGVNNTIIMQGLPGLNYLVAEADGADPLRDPRVPGKQQSVISFTKKTTPGINVARGDGFPTKVFFNGEECSLPSVYPSSSGFRNGFSLATSLLLTLLMILLMR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00283 644 Pfam COBRA-like protein 220 399 IPR006918 GO:0010215|GO:0031225
Gma17g00283 644 PANTHER COBRA-LIKE PROTEIN 7 3 643 - -
Gma17g00283 644 PANTHER COBRA-LIKE PROTEIN 7 3 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00283 Gma-Chr17 2290822 2293852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00283 31 629 COBRA Gene Family AT4G16120 68.657 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00283 - - gmx:100803929 1306.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00283 17 2290822 2293852 Gma17g00283 17 2290822 2293852 ECH
Gma17g00283 17 2290822 2293852 Gma15g01352 15 12087944 12088333 PCT
Gma17g00283 17 2290822 2293852 Gma09g00358 09 3374486 3377119 PCT
Gma15g01352 15 12087944 12088333 Gma17g00283 17 2290822 2293852 PCT
Gma09g00358 09 3374486 3377119 Gma17g00283 17 2290822 2293852 PCT