Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00282 ATGAATCTCAGCAACGGAAAGGGATCCATGTCAACGCTTACTGCAAGCGTCGTTATGAAATCCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTCGTGGTGGACGATGACCCCACGTGTCTCATGATTCTTGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACCAAATGCAATCGAGCAGAAACTGCTCTCTCACTGCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGCGTGACTCATGGTGCTTGTGATTACTTAATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCACGTGGTTCGGAAGAGGAAGAATGAGTGGAAAGATGCCGAGCAATCAGGCAGTGCCGAAGAAGGAGATCGCCATCCAAAGGCTTCTGATGAAGCAGATTACTCTTCATCGGCGAATGAAGGCAGTTGGAGAAACTCCAAGAAGAGAAGGGATGAGGAAGAGGAGGCAGAGGATAGGGATGACACATCCACGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGAGTGTCTCAGCACCAGAATAACTTGAACAACTCCTTTCTCGGCCCCCAAGAGGCAACATTTGGGACAATTTCTTCAATTAATGGGATTGATCTTCAAACTCTTGCAGTCGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGTCGACTGCAAAAGCTGGTGTACCTATTCCTCTCATGGATCAAAGAAATCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGCCAGCCACAACATTTAAGCACTAGTAAACCAATGAACTTGTTGCATGGAATCCCTACCAACATGGAACCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGGCGGCTTGAATATGCGAGTCAATGCTTCTGCTACACAAGGCAACCCCATATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTTAGTGAAAATACTGGTCCTCGTGTTCCAAGACTTCCATCATCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAATGGGATTGCGGGTAATAACAGAGGACCTGCATATAATCCTGTTCCACCGAGCTCTTCATTGTTGAGTTTTCCTATGAATCAAACCTCTGAAATGTCTGTCAACAATAGTTTCCCAATTGGAACCACCCCAGGTATATCAAGTATCACAACAAAAGGCTCTTTTCAAGAAGAAGTTACATCAGGAATTAAAGGATCCAGTGGGTTTCCAAGTTATGATATTTTTAATGAACTGCATCATCAGAAGTCCCATGATTTGGAGATAACAAACCCAGGCTTGACATACAATGCCTCCCATCATGTAAACCCTTTACAAGGTAACATTGATGTTGCACCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACACAACAGACCGGCCAAAGCAGAGATGGCGCTTTGATTGGAAAAGCTATGTTCTCCATGGGAGAAGGCTTGGAACAAAATAACCTCCAAAATGCTAACTTCAATCCACTTCTTGTTGACAATTCAATAAGGATCAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAATCTCTTCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAGCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTAGACAACATTCCTGTCTAG 2034 0.4503 MNLSNGKGSMSTLTASVVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRVNASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGFPSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNANFNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAENEFEFDGYSLDNIPV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00282 677 CDD REC_typeB_ARR-like 35 149 - -
Gma17g00282 677 MobiDBLite consensus disorder prediction 189 210 - -
Gma17g00282 677 SMART REC_2 33 145 IPR001789 GO:0000160
Gma17g00282 677 MobiDBLite consensus disorder prediction 156 177 - -
Gma17g00282 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 649 - -
Gma17g00282 677 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Gma17g00282 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Gma17g00282 677 Gene3D - 210 272 - -
Gma17g00282 677 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Gma17g00282 677 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Gma17g00282 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 649 IPR045279 GO:0009736
Gma17g00282 677 MobiDBLite consensus disorder prediction 156 210 - -
Gma17g00282 677 PIRSF RR_ARR_type-B 13 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma17g00282 677 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Gma17g00282 677 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Gma17g00282 677 SUPERFAMILY CheY-like 32 156 IPR011006 -
Gma17g00282 677 Gene3D - 33 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00282 Gma-Chr17 2283557 2287802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00282 68 677 Response Regulator Gene Family AT3G16857 50.154 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma17g00282 Response_reg 6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00282 - K14491 gmx:100781102 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00282 17 2283557 2287802 Gma17g00282 17 2283557 2287802 ECH
Gma17g00282 17 2283557 2287802 Gma15g01353 15 12091578 12096326 PCT
Gma17g00282 17 2283557 2287802 Gma09g00359 09 3378768 3382785 PCT
Gma15g01353 15 12091578 12096326 Gma17g00282 17 2283557 2287802 PCT
Gma09g00359 09 3378768 3382785 Gma17g00282 17 2283557 2287802 PCT