Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00231 ATGATGGATAACGTTGGAGGCAGTTCCTCTAATATTGCTGAAAATAGTGGCATCATCAGGGAACAGGACCGGTTGTTGCCAATAGCCAATGTTGGGAAGATCATGAAGCAGATTCTACCTCCGAACGCAAAAATCTCCAAGGAATCGAAGGAAACAATGCAAGAGTGCGTGTCGGAGTTCATAAGCTTTGTAACCAGCGAGGCGTCGGAGAAGTGCAGGAAGGAAAGGAGGAAGACAGTGAACGGGGATGACATATGCTGGGCCTTGGGGTCGCTTGGTTTTGACGACTATGCAGAGCCATTGAGAAGGTATTTGCAAAGATATAGAGAACAAGAACTAGATAGAGCAAATAACCCCCCCAAAAGAGGATAa 372 0.4624 MMDNVGGSSSNIAENSGIIREQDRLLPIANVGKIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLQRYREQELDRANNPPKRG 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00231 123 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Gma17g00231 123 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Gma17g00231 123 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Gma17g00231 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Gma17g00231 123 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 118 - -
Gma17g00231 123 SUPERFAMILY Histone-fold 22 117 IPR009072 GO:0046982
Gma17g00231 123 Gene3D Histone, subunit A 14 123 IPR009072 GO:0046982
Gma17g00231 123 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma17g00231 123 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00231 Gma-Chr17 1885494 1885865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00231 14 123 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.909 3.21e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma17g00231 CBFD_NFYB_HMF 4.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00231 K08065 - gmx:100794902 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00231 17 1885494 1885865 Gma15g01435 15 12929069 12929503 PCT
Gma17g00231 17 1885494 1885865 Gma09g00427 09 4020343 4021831 PCT
Gma15g01435 15 12929069 12929503 Gma17g00231 17 1885494 1885865 PCT
Gma09g00427 09 4020343 4021831 Gma17g00231 17 1885494 1885865 PCT