Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00224 ATGTTCAGTCCAAGCATGGATTCTGCAAGGGATGCGAGTGGTGTGGCAGGGACCGTGCTAATTCCCATGCGGTTTGTGTGGCCGTACGGGGGAAGAAGTGTGTATCTAAGTGGTTCTTTCACGCGGTGGTCTGAACTTCTACAAATGTCGCCTGTGGAAGGCTGCCCAACTGTGTTTCAAGTTATTCATAGCTTGGTACCTGGTCATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGACCTTCAACCTTGTGAATCTGGAGAATATGGGATTGTTAACACTGTTTCATTGGCTACTGATCCTAATATTTTACCTGTTTTAACTCCAGACATAGTTTCTGGATCTAACATGGATGTCGACAACGAGGCTTTTCGACGCATGGTCCGATTGACAGATGGTACATTAAGTAATGTGTTATTGCCAAGAATATCTGATGTTGATATACAGACCTCTCGTCAGCGTATTTCTGCATTCCTATCTATGAGTACAGCATATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTGCCTGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTCCCATTGCTCCTCTCTGGGACATCTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCCTTGGATTTTATTTTAATTTTAAGAGAGCTCGGAAATCATGGGTCCAATCTAACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGGAGGAAAATGGACAGGATTTACACAATGTTTTATCCGTGCAGGGCCATACGATAATTTGAAAGAGATTGCTGTGAAGATCCTGCAACATGGAATTTCAACAGTTCCTATTATTCATTCAGAAGATGGTTCATTTCCACAGCTACTACATCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTGCCTATACTTCAACTTCCAATTTGTGCAATCCCTGTGGGCACGTGGGTGCCCAAAATTGGGGAGTCAAATCGCCGGCCTCTAGCAATGTTGAGACCAAATGCTTCACTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAGTGACTCATTACTGGATATTTATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAACTTATACCCATATTAATCTTGATGAAATGACTGTTCATCAGGCATTGCAATTGGGCCAGGATTCTTATAATACTTATGAGCTGAGTTGTCAAAGATGTCAGATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAACGTTTGGCAAGTCCAGGTGTGAGGCGGCTTGTAATTGTGGAAGCTGGCAGCAAGCGCGTAGAAGGCATCATAGCACTGAGTGACATATTCAACTTCTTCCTTGGTTATAACAGTTAG 1449 0.4217 MFSPSMDSARDASGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLVPGHHQYKFFVDGEWRHDDLQPCESGEYGIVNTVSLATDPNILPVLTPDIVSGSNMDVDNEAFRRMVRLTDGTLSNVLLPRISDVDIQTSRQRISAFLSMSTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPIAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKGGKWTGFTQCFIRAGPYDNLKEIAVKILQHGISTVPIIHSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMTVHQALQLGQDSYNTYELSCQRCQMCLRTDSLHKVMERLASPGVRRLVIVEAGSKRVEGIIALSDIFNFFLGYNS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00224 482 Gene3D - 327 482 IPR046342 -
Gma17g00224 482 Gene3D Immunoglobulins 18 101 IPR013783 -
Gma17g00224 482 SUPERFAMILY CBS-domain pair 157 316 IPR046342 -
Gma17g00224 482 SMART cbs_1 347 395 IPR000644 -
Gma17g00224 482 SMART cbs_1 429 478 IPR000644 -
Gma17g00224 482 SMART cbs_1 177 226 IPR000644 -
Gma17g00224 482 ProSiteProfiles CBS domain profile. 343 400 IPR000644 -
Gma17g00224 482 Pfam CBS domain 432 478 IPR000644 -
Gma17g00224 482 Pfam CBS domain 345 391 IPR000644 -
Gma17g00224 482 Gene3D - 148 319 IPR046342 -
Gma17g00224 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 482 - -
Gma17g00224 482 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Gma17g00224 482 CDD E_set_AMPKbeta_like_N 22 99 - -
Gma17g00224 482 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 482 - -
Gma17g00224 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Gma17g00224 482 SUPERFAMILY CBS-domain pair 344 479 IPR046342 -
Gma17g00224 482 SUPERFAMILY E set domains 21 99 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00224 Gma-Chr17 1840855 1848112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00224 17 111 Protein tyrosine phosphatase (PTP) family AT3G01510 31.633 1.80e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00224 - - gmx:100783251 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00224 17 1840855 1848112 Gma17g00224 17 1840855 1848112 ECH
Gma17g00224 17 1840855 1848112 Gma15g01439 15 13016673 13029108 PCT
Gma17g00224 17 1840855 1848112 Gma09g00431 09 4105324 4114673 PCT
Gma15g01439 15 13016673 13029108 Gma17g00224 17 1840855 1848112 PCT
Gma09g00431 09 4105324 4114673 Gma17g00224 17 1840855 1848112 PCT