Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00223 ATGGCTCCTTCTAGGAAATCTAGAAGTGTAAATAAGAGGTTTTCTACTGTTCGTGAGGCTGCATCTAGTAAAGACAAAATTACAGAGAATGCTAGCAAAAATAGGCTGAAGGTGAGTCCTGGTATTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGGCCACAATGGAATAAGGAGGAGCTTGAGCATTTCTATGAAGCTTACCGTAAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTGCATAATAGATCTGTGGAAATGGTAGAGGCCCTGTACACTATGAATAGGGCATATTTATCTCTTCCAGAGGGTACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTGTTCTGGGAGGAAGTGACAGTGGTAAAGAAAGCAATGACGATGCAGAAATATCTAAAAAGTCTCAAAAGCGTTTGCGAGGAAAGCATCTAAGTGACAGTAAAGCATTAGAAGGCCACTTTTCAGATCATTCTCAGTCACATTCTGTTGCATCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGACATTCTGGAATTAGGCCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATTGGTAAAGATAATGGGGATAGGTTTTTTTCATCTGCCAGGCAGGGCTCCAAACAAATGGTTGATACTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTTCGAAAatttctggatcaccagacaaaaaatttgtgccttcactgggtctgaaaagtgggaagaagCATCCTAAATCAGAAATAGCTGGAGCAAACTTTTGCAGTTCTGATTTGGATGATGGTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGAAATAATGAAGATTATTCTAGAAAAACAATTCATCGGAGTGGTAGAGAAAATACTGGAAGAGAAAGGAATCAAGAAAAGAAAATTAAAAAATATGGGAAGAATTTTGAGACGGGAGAGAATTTAAACAAGCATTTGAATGACGTAAAGGAAGCCTCCAGTGGAACAGATGACGGTAAAAATCTTAGTTTTATCAAATCGGATTTTGTCACAGATTTTGCAGATGCGAAAAATGCAAGGTCCTCTTACAAGGGTTCCAGGACGAAAAGTAAAAAGCTACGGTTAGAGAAAGATGAAGGTTCTGCTTTTGATGCTCTGAAAACTTTGGCTGATTTATCTTTGATGCTGCCAGTAACGAACCCTGATACCGAGTCATCTGCACAGTTCAAGGAAGGAAACCATGATGCTGTTGATGAATCTAAAATGGAAACACATAAAGTATTTCCTAGGATTGAAAGCACTGCTTCAAGTAAATTGGGCAAGGTTTTTTCTGATAATGGAGTTGCTGTTCCTGAAGCAGAAGGAGCACACCAGCTTAATGCAGGATTCAGGAAAAGGAAACAAAAATCTTTTAACTTGAAATACGATGAAATTCATACTGGTTCTCATTTAAGTGGTTCCCAGAAATCCAAGGCTACTGACGAGGTGAAGAAATCCATTGTTAAAGGTAAGCGGTCATCTGTTTCTACAGCACATTCAAGACAACTAAAAGGGGTGAAATCGTTAGGAAATCTGTCTTCAAGCGCTAATGACAAAGGGGAAAAGGATGATTCATCTTTTTCGCTGATGAAGGTTTCCTCAACTAATCAAGGTGGTCCATTAAACAGAGGAAAGCCAAGAAGAAAGATGGAAAAACCAAAACCAATGGTACAACAAGATTTGGTGGTGTCCAGAAATATTTTTAGCAGTCAACATAAGAAATCCATTGCCTCACTCCAAGATGGCTCTTATAGTCAAAAGGGAAAGCTTATCAATTGCCTGTCTTCATATCAAATGCGGCGATGGTGCACTTTGGAGTGGTTTTATAGTGCTATCGATTACCCATGGTTTTCAAAGAGAGAATTTGTGGAGTACTTAGACCATGTTGGATTGGGTCATGTTCCTAGATTGACTCGTATTGAGTGGGGTGTCATTAGAAGTTCTCTTGGCAGACCACGAAGATTTTCAGAGCAATTTTTGATAGAAGAAAAAAATAAACTTAATCAATACCGGGAATCTGTTAGATCACATTATGCTGAAATTCTTTCTGGTACCAAGGAAGGACTTCCTACTGATTTGGCCCAGCCGTTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCAAAGACGAGAGAGATTCACGATGGAAGTGTATTAACTGTTGACCACTGTAGGTATAGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTCTGTATCCATTTGAAAATATGCCTACGTCTCTGATACAACACAATATCTCTTCTGCTCAAATAAACCAGGACTTTATTGAGCTCAAGCCTAATGGAAAACTGAAACAGAGAAAGGTTGCTGGGCACACAATATTGTCCCCTAGTGAGAACTTGGATACCATAAAAAATCTTCATATACCCCCCACTATGCACGGAAGCAGTACTTTATCAAAACAGgttttttcttcaagctccaaatcacaaccaaaagttgtgtgcagtgagattggaattggtaatgcccaactagcatcaagttctcaaccgtcccttcttgatcatgtccattcaaaagaagctgacatattagccatttcagagttgaatcgtgctctagacaaaaaggaacttgtattgtctgaactgaagcacatgaacgatggggtatcagagagccagaaatatggagacaactcagtaaaggattcagaaccttttaagaggaattatgcttcagtactaaagcaattaactgaagcaaatgaacaggtttcttctgccttgttttgcttgaggcaacgcaacacatatcaagcaagctcctctgttttgtcattaaagcccatggctaattttgatgatcctagtggtcaggccagctcttccaattgttcggcttgccacaaccaagaatctatatctcaaagtcatataactgagattgttgaaagttctagaagaaaagcaagaatgatggTTGTTCAAGCTACACAGGCTATGTCAAATTTAAGAAAGACAGAAAGTAAGGTTGAAAGAATTGAGGATGCAATAAATTTTATCAATAACCAGCTTTCAGTGGACGAACCTACTGCTTCAGCCACAACATTTCTTCCTACAGATTCTTTTTCTCTGGCTTCTCAGGATCAATTGACTGCCAGCGTATTAAACCCCTTGGCAAGTTGTCATGTACAAGATGCTGAACTTAACAGTTCATCTGATCAAAATGAAATGAAAATTCCCTCAGAACTCATATCTCATTGCCTAGCTACATTGTTCGTGATTCAGAAGTGTACGGAACGACAATTCCCCCCAGCTGATGTTGCTCAGGTACTAGATTCTGCTGTCACCAGTTTGCAGCCATTATCTTTAAAGAATCTTCCAATATATGGTGAGATACAGAAATGCATGGGCATTATAAGAAATCAGATATTGGCTCTCATACCGACATAG 3546 0.3308 MAPSRKSRSVNKRFSTVREAASSKDKITENASKNRLKVSPGIQKKRKLADMLGPQWNKEELEHFYEAYRKYGKDWKKVALAVHNRSVEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGKESNDDAEISKKSQKRLRGKHLSDSKALEGHFSDHSQSHSVASGDGCLSLLKKRHSGIRPHAVRKRTPRVPISYSIGKDNGDRFFSSARQGSKQMVDTNDVAHKIALALTEASQRGGSSKISGSPDKKFVPSLGLKSGKKHPKSEIAGANFCSSDLDDGSSELSLGSTEGNNEDYSRKTIHRSGRENTGRERNQEKKIKKYGKNFETGENLNKHLNDVKEASSGTDDGKNLSFIKSDFVTDFADAKNARSSYKGSRTKSKKLRLEKDEGSAFDALKTLADLSLMLPVTNPDTESSAQFKEGNHDAVDESKMETHKVFPRIESTASSKLGKVFSDNGVAVPEAEGAHQLNAGFRKRKQKSFNLKYDEIHTGSHLSGSQKSKATDEVKKSIVKGKRSSVSTAHSRQLKGVKSLGNLSSSANDKGEKDDSSFSLMKVSSTNQGGPLNRGKPRRKMEKPKPMVQQDLVVSRNIFSSQHKKSIASLQDGSYSQKGKLINCLSSYQMRRWCTLEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKNKLNQYRESVRSHYAEILSGTKEGLPTDLAQPLIVGQRVIAIHPKTREIHDGSVLTVDHCRYRVQFDQPELGVEFVMDIDCMPLYPFENMPTSLIQHNISSAQINQDFIELKPNGKLKQRKVAGHTILSPSENLDTIKNLHIPPTMHGSSTLSKQVFSSSSKSQPKVVCSEIGIGNAQLASSSQPSLLDHVHSKEADILAISELNRALDKKELVLSELKHMNDGVSESQKYGDNSVKDSEPFKRNYASVLKQLTEANEQVSSALFCLRQRNTYQASSSVLSLKPMANFDDPSGQASSSNCSACHNQESISQSHITEIVESSRRKARMMVVQATQAMSNLRKTESKVERIEDAINFINNQLSVDEPTASATTFLPTDSFSLASQDQLTASVLNPLASCHVQDAELNSSSDQNEMKIPSELISHCLATLFVIQKCTERQFPPADVAQVLDSAVTSLQPLSLKNLPIYGEIQKCMGIIRNQILALIPT 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00223 1181 SMART sant 52 100 IPR001005 -
Gma17g00223 1181 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Gma17g00223 1181 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 427 441 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 522 548 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 290 328 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 244 276 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 127 153 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 422 441 - -
Gma17g00223 1181 Gene3D - 3 108 - -
Gma17g00223 1181 CDD SANT 56 90 IPR001005 -
Gma17g00223 1181 SMART DIRP_2 640 741 IPR033471 -
Gma17g00223 1181 Coils Coil 1028 1055 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 1 36 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 304 328 - -
Gma17g00223 1181 Pfam DIRP 639 740 IPR033471 -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 1 17 - -
Gma17g00223 1181 PANTHER LIN-9 1 1181 IPR010561 GO:0006351|GO:0017053
Gma17g00223 1181 Coils Coil 897 917 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 559 573 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 18 32 - -
Gma17g00223 1181 MobiDBLite consensus disorder prediction 500 588 - -
Gma17g00223 1181 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Gma17g00223 1181 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1181 IPR028306 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00223 Gma-Chr17 1824731 1838406 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma17g00223 DIRP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00223 - - gmx:100781646 2248.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00223 17 1824731 1838406 Gma17g00223 17 1824731 1838406 ECH