Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00221 ATGGAGCGGTACGGGCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACTTTGGCCGCCGGCGCCGACGCCGGCCTCGAAGAGTCGTCGTGGCAACTCGGATTAGCCGGTGCTGAATCGTACCCTATGCGTCCCGACGAGGCTGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGAGACCGTGCCGCGGTTATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTTTATGAGGACCGGATTGTGCAAATTTGGTGTGTCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGGTACCCATTGCGAGTGGCTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCACAGCCTGCAGGCGTCCAAGCTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACAGATCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGACCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTTTTACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCTAGCCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTCTGTCGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAACTGTAACCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCATCTGCCTCTTCCTTAGCTGATATGCCAGTGGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCCAGAATGTCTTCAATGAGCACATCAACTGGATCAGTTGGCATGACTTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1455 0.5127 MERYGRASEGSQSDPSPEWTLAAGADAGLEESSWQLGLAGAESYPMRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYFMRTGLCKFGVSCKYHHPRQAAGTATPVPLNYYGYPLRVAEKECSYYVKTGQCKFGATCKFHHPQPAGVQALAPSPVPPVSPLPVPVPSPMYPTVQIPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWSPYQAPATNPVLPSSNTSNAGSTQFYGISQLPSSPATFTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHHYMKTGECKFGLSCRYHHPPDKSAPKATVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSNKESVASRMSSMSTSTGSVGMTLSSVGPISHSSTQPSAQSSSSPATTSATTSSTVSHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00221 484 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Gma17g00221 484 MobiDBLite consensus disorder prediction 277 310 - -
Gma17g00221 484 MobiDBLite consensus disorder prediction 1 20 - -
Gma17g00221 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Gma17g00221 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gma17g00221 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Gma17g00221 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Gma17g00221 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 332 IPR000571 GO:0046872
Gma17g00221 484 SUPERFAMILY CCCH zinc finger 140 167 IPR036855 GO:0046872
Gma17g00221 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 467 - -
Gma17g00221 484 Gene3D - 126 176 - -
Gma17g00221 484 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Gma17g00221 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 467 - -
Gma17g00221 484 Gene3D - 294 381 - -
Gma17g00221 484 MobiDBLite consensus disorder prediction 277 295 - -
Gma17g00221 484 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gma17g00221 484 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gma17g00221 484 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Gma17g00221 484 MobiDBLite consensus disorder prediction 407 484 - -
Gma17g00221 484 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Gma17g00221 484 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Gma17g00221 484 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Gma17g00221 484 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gma17g00221 484 SMART c3hfinal6 141 166 IPR000571 GO:0046872
Gma17g00221 484 MobiDBLite consensus disorder prediction 427 484 - -
Gma17g00221 484 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Gma17g00221 484 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Gma17g00221 484 Gene3D - 46 125 - -
Gma17g00221 484 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Gma17g00221 484 SUPERFAMILY CCCH zinc finger 48 76 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00221 Gma-Chr17 1805391 1809748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00221 1 440 C2H2 Transcription Factor Family AT5G18550 56.710 7.58e-157 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma17g00221 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00221 - - gmx:100778426 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00221 17 1805391 1809748 Gma17g00221 17 1805391 1809748 ECH
Gma17g00221 17 1805391 1809748 Gma15g00902 15 7526642 7534757 PCT
Gma17g00221 17 1805391 1809748 Gma13g01907 13 34382559 34391933 PCT
Gma15g00902 15 7526642 7534757 Gma17g00221 17 1805391 1809748 PCT
Gma13g01907 13 34382559 34391933 Gma17g00221 17 1805391 1809748 PCT