Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00220 ATGTCAACCTCGAGAACCTCATCAGATACAGCCTTCAAAGGATATGACCCGAGCCAAACTCAAATGTGTCTGTCTCTCCTTCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGtagaaggaagcaagcagaaccagggaggttccttggtgttaggaggcgcccttggggtcgatatgctgctgaaattagagaccccacaaccaaagagaggcattggcttggcacatttgacactgctcaagaagcagctcttgcttatgacagagctgctctgtccatgaaaggaagccaagctagaaccaactttgtttactctgacaacatcaacttccacactctccagctttctcctATGAATGTTCAAGTTCAACCTCTCTTGCCAGCTTCACAGACGTTCTTCACCAACACCACCACCACCACCACTCAGACCAAAACACCAACCAACCAAAATAGCCTCTCTCAGATTATTCACAGTGCTTCAAACTGTGGAAACCCCTCCCCATTGAACAATGACATGTGTGTTGAAACCACATATGGGTCAGCTCAGGATGACAATTTCTTCTTTTCTAGTGATTCTAACTCGGGCTATCTGGAATGCATAGTTCCTGATAACTGCTTCAGACCTGCTTCATCCAGTTCCAACAGTTCAAACTCCAGAAAGAGCAATGTGAATGATCAAAAGACTAACACAAGCTCCATGGAGAGTACTAATCATCATCATCATCATCAGTTCTCACATGTTGATCACATGACTTCGTTCTCTCAAGAAGAAGGCATTAATGAAATGGCACCAAGGGCCTCTTATAACTTATCAGATTTTTGTTATCAAAGTGAAGTGAGTCAAGGATCATGGGATTGGAATTGCAGTGAACTTTCAGCTATATTTAAGAACCCAATGAGGGTGGAAAATGGGTGCATGGATGATGCATTGTACCCAATAAATGATAGTCCTACTAGTCCAAGCTATGGGCTAATGAATGAGGCTGGTTCTTCTTCTACAACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1065 0.3343 MSTSRTSSDTAFKGYDPSQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLQLSPMNVQVQPLLPASQTFFTNTTTTTTQTKTPTNQNSLSQIIHSASNCGNPSPLNNDMCVETTYGSAQDDNFFFSSDSNSGYLECIVPDNCFRPASSSSNSSNSRKSNVNDQKTNTSSMESTNHHHHHQFSHVDHMTSFSQEEGINEMAPRASYNLSDFCYQSEVSQGSWDWNCSELSAIFKNPMRVENGCMDDALYPINDSPTSPSYGLMNEAGSSSTTCSPSLPPFGDVDLGYPLF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00220 354 MobiDBLite consensus disorder prediction 212 235 - -
Gma17g00220 354 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Gma17g00220 354 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gma17g00220 354 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Gma17g00220 354 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Gma17g00220 354 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Gma17g00220 354 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Gma17g00220 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 354 - -
Gma17g00220 354 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Gma17g00220 354 MobiDBLite consensus disorder prediction 212 259 - -
Gma17g00220 354 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Gma17g00220 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00220 Gma-Chr17 1799811 1800875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00220 1 219 AP2-EREBP Transcription Factor Family AT5G18560 46.038 4.73e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma17g00220 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00220 - - gmx:100793333 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00220 17 1799811 1800875 Gma15g00903 15 7536858 7537796 PCT
Gma17g00220 17 1799811 1800875 Gma13g01906 13 34375760 34376728 PCT
Gma15g00903 15 7536858 7537796 Gma17g00220 17 1799811 1800875 PCT
Gma13g01906 13 34375760 34376728 Gma17g00220 17 1799811 1800875 PCT